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Report for CCDS73571.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73571.1 Public Homo sapiens 13 RCBTB2 24 110 108 CCDS HistoryNCBI Gene:1102Re-query CCDS DB by CCDS ID:73571.1Re-query CCDS DB by GeneID:1102See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 73571.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000544904.3 ENSP00000443904.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000544904.3Link to Ensembl Protein Viewer:ENSP00000443904.2Re-query CCDS DB by Nucleotide ID:ENST00000544904Re-query CCDS DB by Protein ID:ENSP00000443904
Original member Current member NCBI NM_001286831.2 NP_001273760.1 Accepted alive Link to Nucleotide Sequence:NM_001286831.2Link to Protein Sequence:NP_001273760.1Re-query CCDS DB by Nucleotide ID:NM_001286831Re-query CCDS DB by Protein ID:NP_001273760Link to BLAST:NP_001273760.1
Original member Current member NCBI NM_001352426.2 NP_001339355.1 Accepted alive Link to Nucleotide Sequence:NM_001352426.2Link to Protein Sequence:NP_001339355.1Re-query CCDS DB by Nucleotide ID:NM_001352426Re-query CCDS DB by Protein ID:NP_001339355Link to BLAST:NP_001339355.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273760.1 527 O95199-2 527 100% 0 0
NP_001339355.1 527 O95199-2 527 100% 0 0

Chromosomal Locations for CCDS 73571.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 48490111 48490251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48496191 48496321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48499621 48499760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48501742 48501868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48502724 48502914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48510629 48510771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48511770 48511877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48512016 48512174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48512729 48512895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48515205 48515355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48515586 48515711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1584 nt):
ATGTTAGATGTGGGAAAGTGGCCAATTTTTTCCCTTTGTTCTGAAGAAGAACTACAGTTAATTCGTCAGG
CTTGTGTCTTTGGCAGTGCTGGCAATGAAGTTTTATACACTACAGTAAATGATGAGATTTTTGTGCTTGG
CACAAACTGCTGTGGCTGTTTGGGGTTAGGTGACGTCCAGAGCACCATTGAACCTCGGAGACTGGATTCT
TTAAATGGCAAAAAAATAGCCTGCCTCAGCTATGGGAGTGGTCCACATATTGTCCTTGCAACAACAGAAG
GAGAAGTCTTTACCTGGGGTCATAATGCTTATAGCCAGCTGGGCAATGGGACAACTAATCATGGTTTAGT
GCCCTGTCATATCTCTACTAATCTGTCAAACAAACAAGTCATTGAAGTTGCCTGTGGGTCTTACCATTCT
TTGGTGCTAACATCTGATGGAGAGGTATTTGCCTGGGGTTATAATAACTCTGGGCAGGTAGGATCTGGAT
CAACAGTTAATCAGCCAATCCCTCGAAGAGTCACTGGCTGCCTACAAAATAAAGTAGTTGTGACCATAGC
ATGTGGGCAGATGTGCTGCATGGCAGTAGTAGACACGGGGGAGGTCTATGTCTGGGGTTACAACGGAAAC
GGGCAGCTTGGACTCGGCAACAGTGGCAACCAGCCAACCCCTTGCAGAGTGGCAGCTTTGCAAGGCATCC
GTGTCCAGAGGGTCGCCTGTGGCTACGCACACACATTAGTATTAACAGATGAAGGCCAAGTGTATGCTTG
GGGCGCCAATTCTTATGGGCAGTTGGGCACTGGCAATAAAAGCAACCAGTCCTATCCTACTCCTGTCACT
GTGGAAAAGGACAGGATTATCGAGATTGCAGCCTGTCACTCCACACACACGTCTGCGGCCAAGACGCAGG
GTGGGCACGTGTACATGTGGGGCCAGTGCCGGGGTCAGTCCGTGATCCTCCCGCACCTCACCCACTTCTC
CTGCACTGACGACGTGTTTGCCTGCTTTGCCACGCCCGCCGTCACGTGGCGCCTCCTCTCCGTGGAACCT
GATGACCACCTCACAGTGGCTGAGTCACTGAAGAGGGAATTTGACAACCCGGACACTGCAGACCTGAAGT
TTCTAGTTGATGGAAAGTACATTTATGCACATAAAGTCCTTCTCAAGATTCGATGTGAGCATTTTCGTTC
GTCATTGGAAGATAACGAGGATGATATTGTAGAAATGAGTGAATTTTCATATCCTGTTTACCGGGCCTTC
CTGGAATACCTATACACAGACAGCATCAGCCTTTCTCCTGAGGAGGCAGTAGGACTGCTAGACTTGGCTA
CATTTTATAGAGAAAATCGTTTGAAAAAGCTCTGCCAACAAACTATCAAGCAAGGCATCTGCGAGGAGAA
TGCCATCGCTCTGCTCTCGGCTGCGGTGAAGTATGATGCACAGGATTTAGAAGAATTCTGCTTCAGGTTT
TGCATAAACCATCTGACTGTAGTAACACAAACATCAGGTTTTGCAGAAATGGACCATGATCTCCTGAAGA
ACTTTATCAGCAAAGCAAGCAGAGTTGGAGCCTTTAAAAATTGA

Translation (527 aa):
MLDVGKWPIFSLCSEEELQLIRQACVFGSAGNEVLYTTVNDEIFVLGTNCCGCLGLGDVQSTIEPRRLDS
LNGKKIACLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNKQVIEVACGSYHS
LVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGN
GQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVT
VEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFACFATPAVTWRLLSVEP
DDHLTVAESLKREFDNPDTADLKFLVDGKYIYAHKVLLKIRCEHFRSSLEDNEDDIVEMSEFSYPVYRAF
LEYLYTDSISLSPEEAVGLLDLATFYRENRLKKLCQQTIKQGICEENAIALLSAAVKYDAQDLEEFCFRF
CINHLTVVTQTSGFAEMDHDLLKNFISKASRVGAFKN


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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