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Report for CCDS41791.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41791.1 Public Homo sapiens 12 TARBP2 24 110 108 CCDS HistoryNCBI Gene:6895Re-query CCDS DB by CCDS ID:41791.1Re-query CCDS DB by GeneID:6895See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41791.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394357.6 ENSP00000377885.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394357.6Link to Ensembl Protein Viewer:ENSP00000377885.2Re-query CCDS DB by Nucleotide ID:ENST00000394357Re-query CCDS DB by Protein ID:ENSP00000377885
Original member Current member EBI ENST00000456234.6 ENSP00000416077.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000456234.6Link to Ensembl Protein Viewer:ENSP00000416077.2Re-query CCDS DB by Nucleotide ID:ENST00000456234Re-query CCDS DB by Protein ID:ENSP00000416077
Original member Current member NCBI NM_004178.5 NP_004169.3 Accepted alive Link to Nucleotide Sequence:NM_004178.5Link to Protein Sequence:NP_004169.3Re-query CCDS DB by Nucleotide ID:NM_004178Re-query CCDS DB by Protein ID:NP_004169Link to BLAST:NP_004169.3
Original member Current member NCBI NM_134324.3 NP_599151.2 Accepted alive Link to Nucleotide Sequence:NM_134324.3Link to Protein Sequence:NP_599151.2Re-query CCDS DB by Nucleotide ID:NM_134324Re-query CCDS DB by Protein ID:NP_599151Link to BLAST:NP_599151.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004169.3 345 Q15633-2 345 100% 0 0
NP_599151.2 345 Q15633-2 345 100% 0 0

Chromosomal Locations for CCDS 41791.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 53502025 53502184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53503027 53503129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53503713 53503808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53504397 53504469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53504698 53504815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53505135 53505262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53505649 53505850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53505991 53506148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGCTGGCCGCCAACCCAGGCAAGACCCCGATCAGCCTTCTGCAGGAGTATGGGACCAGAATAGGGAAGA
CGCCTGTGTACGACCTTCTCAAAGCCGAGGGCCAAGCCCACCAGCCTAATTTCACCTTCCGGGTCACCGT
TGGCGACACCAGCTGCACTGGTCAGGGCCCCAGCAAGAAGGCAGCCAAGCACAAGGCAGCTGAGGTGGCC
CTCAAACACCTCAAAGGGGGGAGCATGCTGGAGCCGGCCCTGGAGGACAGCAGTTCTTTTTCTCCCCTAG
ACTCTTCACTGCCTGAGGACATTCCGGTTTTTACTGCTGCAGCAGCTGCTACCCCAGTTCCATCTGTAGT
CCTAACCAGGAGCCCCCCCATGGAACTGCAGCCCCCTGTCTCCCCTCAGCAGTCTGAGTGCAACCCCGTT
GGTGCTCTGCAGGAGCTGGTGGTGCAGAAAGGCTGGCGGTTGCCGGAGTACACAGTGACCCAGGAGTCTG
GGCCAGCCCACCGCAAAGAATTCACCATGACCTGTCGAGTGGAGCGTTTCATTGAGATTGGGAGTGGCAC
TTCCAAAAAATTGGCAAAGCGGAATGCGGCGGCCAAAATGCTGCTTCGAGTGCACACGGTGCCTCTGGAT
GCCCGGGATGGCAATGAGGTGGAGCCTGATGATGACCACTTCTCCATTGGTGTGGGCTCCCGCCTGGATG
GTCTTCGAAACCGGGGCCCAGGTTGCACCTGGGATTCTCTACGAAATTCAGTAGGAGAGAAGATCCTGTC
CCTCCGCAGTTGCTCCCTGGGCTCCCTGGGTGCCCTGGGCCCTGCCTGCTGCCGTGTCCTCAGTGAGCTC
TCTGAGGAGCAGGCCTTTCACGTCAGCTACCTGGATATTGAGGAGCTGAGCCTGAGTGGACTCTGCCAGT
GCCTGGTGGAACTGTCCACCCAGCCGGCCACTGTGTGTCATGGCTCTGCAACCACCAGGGAGGCAGCCCG
TGGTGAGGCTGCCCGCCGTGCCCTGCAGTACCTCAAGATCATGGCAGGCAGCAAGTGA

Translation (345 aa):
MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVA
LKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPV
GALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLD
ARDGNEVEPDDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSEL
SEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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