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Report for CCDS8839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8839.1 Public Homo sapiens 12 KRT79 24 110 108 CCDS HistoryNCBI Gene:338785Re-query CCDS DB by CCDS ID:8839.1Re-query CCDS DB by GeneID:338785See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8839.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330553.6 ENSP00000328358.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000330553.6Link to Ensembl Protein Viewer:ENSP00000328358.5Re-query CCDS DB by Nucleotide ID:ENST00000330553Re-query CCDS DB by Protein ID:ENSP00000328358
Original member Current member NCBI NM_175834.3 NP_787028.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_175834.3Link to Protein Sequence:NP_787028.1Re-query CCDS DB by Nucleotide ID:NM_175834Re-query CCDS DB by Protein ID:NP_787028Link to BLAST:NP_787028.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_787028.1 535 Q5XKE5 535 100% 0 0

Chromosomal Locations for CCDS 8839.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 52821872 52822077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52822345 52822379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52823016 52823236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52823887 52824012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52824198 52824362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52830023 52830118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52830232 52830292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52831406 52831626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52833784 52834260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGAGGTCCTCCGTCTCTCGGCAAACATACTCCACAAAAGGGGGCTTCAGCTCCAACTCTGCCAGCGGAG
GGAGTGGGTCCCAGGCCCGCACCAGCTTCAGCTCAGTGACGGTGTCTCGGAGCAGTGGCAGTGGTGGCGG
GGCCCACTGTGGCCCCGGCACAGGTGGCTTTGGCAGCCGAAGCCTCTATAACTTGGGGGGCCACAAGAGT
ATCTCTGTCAGTGTGGCCGGAGGGGCCTTGTTGGGGCGGGCTCTGGGGGGCTTTGGCTTTGGCAGCAGGG
CATTTATGGGACAGGGGGCTGGCAGGCAGACGTTTGGGCCTGCTTGTCCTCCTGGGGGGATCCAGGAGGT
CACTGTCAACCAGAGCCTGCTGACCCCCCTCCATGTGGAGATTGACCCCGAGATCCAGCGAGTGCGCACT
CAGGAGCGGGAGCAGATCAAGACCCTCAACAACAAGTTCGCCTCCTTCATCGACAAGGTGCGGTTCCTGG
AGCAACAGAATAAGGTGCTGGAGACCAAGTGGGCACTGCTGCAGGAGCAGGGCCAGAACTTGGGTGTCAC
CAGGAACAACCTGGAGCCCCTCTTTGAGGCCTACCTGGGTAGCATGCGGAGCACGCTGGACAGACTTCAG
AGCGAGCGGGGGAGGCTGGACTCAGAGCTCAGGAACGTGCAGGACCTTGTGGAGGACTTCAAGAACAAGT
ACGAGGATGAAATCAACAAGCACACTGCTGCAGAGAACGAGTTTGTGGTGCTCAAGAAGGATGTGGATGC
AGCATACATGGGCCGGATGGATCTGCATGGCAAAGTGGGCACCTTGACCCAGGAGATTGACTTCCTGCAG
CAACTCTATGAAATGGAGCTGAGCCAAGTGCAGACCCACGTGTCTAACACCAATGTGGTGCTGTCCATGG
ACAACAACCGCAACCTGGACCTGGACAGCATCATCGCCGAGGTCAAGGCCCAGTATGAGCTGATTGCCCA
GAGGAGCCGGGCTGAGGCCGAGGCCTGGTACCAGACCAAGTATGAGGAGCTGCAGGTGACTGCTGGGAAG
CATGGGGACAACCTGCGGGACACCAAGAACGAGATTGCTGAGCTCACCCGCACTATCCAGAGGCTGCAGG
GGGAGGCTGATGCAGCCAAGAAGCAGTGTCAGCAGCTGCAGACGGCCATTGCGGAAGCGGAGCAGCGTGG
GGAGCTGGCACTCAAGGATGCTCAGAAGAAGCTTGGGGATCTGGATGTGGCCCTGCACCAGGCCAAGGAG
GACCTGACACGGCTGCTGCGTGACTACCAGGAGCTGATGAATGTCAAGCTGGCCCTGGACGTGGAGATTG
CCACCTACCGCAAGCTTCTGGAGAGCGAGGAGAGCAGGATGTCTGGAGAATGTCCCAGTGCAGTCAGCAT
TTCTGTGACTGGCAACTCCACCACTGTGTGCGGAGGTGGCGCAGCCAGCTTTGGAGGTGGCATCTCCCTG
GGTGGGAGTGGGGGGGCCACCAAGGGTGGATTCAGCACAAATGTGGGCTATAGCACCGTCAAGGGAGGGC
CAGTCTCTGCGGGCACCTCCATCCTGCGGAAGACCACTACGGTCAAGACGTCCAGCCAGAGGTATTAG

Translation (535 aa):
MRSSVSRQTYSTKGGFSSNSASGGSGSQARTSFSSVTVSRSSGSGGGAHCGPGTGGFGSRSLYNLGGHKS
ISVSVAGGALLGRALGGFGFGSRAFMGQGAGRQTFGPACPPGGIQEVTVNQSLLTPLHVEIDPEIQRVRT
QEREQIKTLNNKFASFIDKVRFLEQQNKVLETKWALLQEQGQNLGVTRNNLEPLFEAYLGSMRSTLDRLQ
SERGRLDSELRNVQDLVEDFKNKYEDEINKHTAAENEFVVLKKDVDAAYMGRMDLHGKVGTLTQEIDFLQ
QLYEMELSQVQTHVSNTNVVLSMDNNRNLDLDSIIAEVKAQYELIAQRSRAEAEAWYQTKYEELQVTAGK
HGDNLRDTKNEIAELTRTIQRLQGEADAAKKQCQQLQTAIAEAEQRGELALKDAQKKLGDLDVALHQAKE
DLTRLLRDYQELMNVKLALDVEIATYRKLLESEESRMSGECPSAVSISVTGNSTTVCGGGAASFGGGISL
GGSGGATKGGFSTNVGYSTVKGGPVSAGTSILRKTTTVKTSSQRY


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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