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Report for CCDS8765.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8765.1 Public Homo sapiens 12 LALBA 24 110 108 CCDS HistoryNCBI Gene:3906Re-query CCDS DB by CCDS ID:8765.1Re-query CCDS DB by GeneID:3906See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 8765.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301046.6 ENSP00000301046.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000301046.6Link to Ensembl Protein Viewer:ENSP00000301046.2Re-query CCDS DB by Nucleotide ID:ENST00000301046Re-query CCDS DB by Protein ID:ENSP00000301046
Original member Current member NCBI NM_001384350.1 NP_001371279.1 Accepted alive Link to Nucleotide Sequence:NM_001384350.1Link to Protein Sequence:NP_001371279.1Re-query CCDS DB by Nucleotide ID:NM_001384350Re-query CCDS DB by Protein ID:NP_001371279Link to BLAST:NP_001371279.1
Original member Current member NCBI NM_002289.3 NP_002280.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002289.3Link to Protein Sequence:NP_002280.1Re-query CCDS DB by Nucleotide ID:NM_002289Re-query CCDS DB by Protein ID:NP_002280Link to BLAST:NP_002280.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001371279.1 142 P00709 142 100% 0 0
NP_002280.1 142 P00709 142 100% 0 0

Chromosomal Locations for CCDS 8765.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 48567957 48568017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48568517 48568592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48569082 48569240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48569888 48570020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGAGGTTCTTTGTCCCTCTGTTCCTGGTGGGCATCCTGTTCCCTGCCATCCTGGCCAAGCAATTCACAA
AATGTGAGCTGTCCCAGCTGCTGAAAGACATAGATGGTTATGGAGGCATCGCTTTGCCTGAATTGATCTG
TACCATGTTTCACACCAGTGGTTATGACACACAAGCCATAGTTGAAAACAATGAAAGCACGGAATATGGA
CTCTTCCAGATCAGTAATAAGCTTTGGTGCAAGAGCAGCCAGGTCCCTCAGTCAAGGAACATCTGTGACA
TCTCCTGTGACAAGTTCCTGGATGATGACATTACTGATGACATAATGTGTGCCAAGAAGATCCTGGATAT
TAAAGGAATTGACTACTGGTTGGCCCATAAAGCCCTCTGCACTGAGAAGCTGGAACAGTGGCTTTGTGAG
AAGTTGTGA

Translation (142 aa):
MRFFVPLFLVGILFPAILAKQFTKCELSQLLKDIDGYGGIALPELICTMFHTSGYDTQAIVENNESTEYG
LFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILDIKGIDYWLAHKALCTEKLEQWLCE
KL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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