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Report for CCDS7982.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7982.1 Public Homo sapiens 11 MS4A4A 24 110 108 CCDS HistoryNCBI Gene:51338Re-query CCDS DB by CCDS ID:7982.1Re-query CCDS DB by GeneID:51338See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7982.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337908.5 ENSP00000338648.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000337908.5Link to Ensembl Protein Viewer:ENSP00000338648.4Re-query CCDS DB by Nucleotide ID:ENST00000337908Re-query CCDS DB by Protein ID:ENSP00000338648
Original member Current member NCBI NM_148975.3 NP_683876.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_148975.3Link to Protein Sequence:NP_683876.1Re-query CCDS DB by Nucleotide ID:NM_148975Re-query CCDS DB by Protein ID:NP_683876Link to BLAST:NP_683876.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_683876.1 239 Q96JQ5-1 239 100% 0 0

Chromosomal Locations for CCDS 7982.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60280676 60280716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60292225 60292384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60297197 60297325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60301001 60301057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60302559 60302717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60306100 60306201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60308107 60308178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (720 nt):
ATGCATCAGACCTACAGCAGACATTGCAGGCCTGAAGAAAGCACCTTTTCTGCTGCCATGACAACCATGC
AAGGAATGGAACAGGCCATGCCAGGGGCTGGCCCTGGTGTGCCCCAGCTGGGAAACATGGCTGTCATACA
TTCACATCTGTGGAAAGGATTGCAAGAGAAGTTCTTGAAGGGAGAACCCAAAGTCCTTGGGGTTGTGCAG
ATTCTGACTGCCCTGATGAGCCTTAGCATGGGAATAACAATGATGTGTATGGCATCTAATACTTATGGAA
GTAACCCTATTTCCGTGTATATCGGGTACACAATTTGGGGGTCAGTAATGTTTATTATTTCAGGATCCTT
GTCAATTGCAGCAGGAATTAGAACTACAAAAGGCCTGGTCCGAGGTAGTCTAGGAATGAATATCACCAGC
TCTGTACTGGCTGCATCAGGGATCTTAATCAACACATTTAGCTTGGCGTTTTATTCATTCCATCACCCTT
ACTGTAACTACTATGGCAACTCAAATAATTGTCATGGGACTATGTCCATCTTAATGGGTCTGGATGGCAT
GGTGCTCCTCCTAAGTGTGCTGGAATTCTGCATTGCTGTGTCCCTCTCTGCCTTTGGATGTAAAGTGCTC
TGTTGTACCCCTGGTGGGGTTGTGTTAATTCTGCCATCACATTCTCACATGGCAGAAACAGCATCTCCCA
CACCACTTAATGAGGTTTGA

Translation (239 aa):
MHQTYSRHCRPEESTFSAAMTTMQGMEQAMPGAGPGVPQLGNMAVIHSHLWKGLQEKFLKGEPKVLGVVQ
ILTALMSLSMGITMMCMASNTYGSNPISVYIGYTIWGSVMFIISGSLSIAAGIRTTKGLVRGSLGMNITS
SVLAASGILINTFSLAFYSFHHPYCNYYGNSNNCHGTMSILMGLDGMVLLLSVLEFCIAVSLSAFGCKVL
CCTPGGVVLILPSHSHMAETASPTPLNEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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