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Report for CCDS81568.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81568.1 Public Homo sapiens 11 MS4A6A 24 110 108 CCDS HistoryNCBI Gene:64231Re-query CCDS DB by CCDS ID:81568.1Re-query CCDS DB by GeneID:64231See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81568.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000529054.5 ENSP00000435844.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000529054.5Link to Ensembl Protein Viewer:ENSP00000435844.1Re-query CCDS DB by Nucleotide ID:ENST00000529054Re-query CCDS DB by Protein ID:ENSP00000435844
Original member Current member NCBI NM_001330275.1 NP_001317204.1 Accepted alive Link to Nucleotide Sequence:NM_001330275.1Link to Protein Sequence:NP_001317204.1Re-query CCDS DB by Nucleotide ID:NM_001330275Re-query CCDS DB by Protein ID:NP_001317204Link to BLAST:NP_001317204.1

Chromosomal Locations for CCDS 81568.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60172158 60172253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60173028 60173129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60175402 60175611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60178260 60178316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60179831 60179965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60181581 60181741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60183136 60183205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGGTTTTACTGAAGTTGCTAGAAGTTTACAGAAAAGGAAGTGCAGGAACATTTCACAAATCTACAATCT
TTGGCAACACCATCATGACATCACAACCTGTTCCCAATGAGACCATCATAGTGCTCCCATCAAATGTCAT
CAACTTCTCCCAAGCAGAGAAACCCGAACCCACCAACCAGGGGCAGGATAGCCTGAAGAAACATCTACAC
GCAGAAATCAAAGTTATTGGGACTATCCAGATCTTGTGTGGCATGATGGTATTGAGCTTGGGGATCATTT
TGGCATCTGCTTCCTTCTCTCCAAATTTTACCCAAGTGACTTCTACACTGTTGAACTCTGCTTACCCATT
CATAGGACCCTTTTTTTTTATCATCTCTGGCTCTCTATCAATCGCCACAGAGAAAAGGTTAACCAAGCTT
TTGGTGCATAGCAGCCTGGTTGGAAGCATTCTGAGTGCTCTGTCTGCCCTGGTGGGTTTCATTATCCTGT
CTGTCAAACAGGCCACCTTAAATCCTGCCTCACTGCAGTGTGAGTTGGACAAAAATAATATACCAACAAG
AAGTTATGTTTCTTACTTTTATCATGATTCACTTTATACCACGGACTGCTATACAGCCAAAGCCAGTCTG
GCTGGAACTCTCTCTCTGATGCTGATTTGCACTCTGCTGGAATTCTGCCTAGCTGTGCTCACTGCTGTGC
TGCGGTGGAAACAGGCTTACTCTGACTTCCCTGGGAGTGTACTTTTCCTGCCTCACAGTTACATTGGTAA
TTCTGGCATGTCCTCAAAAATGACTCATGACTGTGGATATGAAGAACTATTGACTTCTTAA

Translation (276 aa):
MVLLKLLEVYRKGSAGTFHKSTIFGNTIMTSQPVPNETIIVLPSNVINFSQAEKPEPTNQGQDSLKKHLH
AEIKVIGTIQILCGMMVLSLGIILASASFSPNFTQVTSTLLNSAYPFIGPFFFIISGSLSIATEKRLTKL
LVHSSLVGSILSALSALVGFIILSVKQATLNPASLQCELDKNNIPTRSYVSYFYHDSLYTTDCYTAKASL
AGTLSLMLICTLLEFCLAVLTAVLRWKQAYSDFPGSVLFLPHSYIGNSGMSSKMTHDCGYEELLTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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