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Report for CCDS7904.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7904.1 Public Homo sapiens 11 IFTAP 24 110 108 CCDS HistoryNCBI Gene:119710Re-query CCDS DB by CCDS ID:7904.1Re-query CCDS DB by GeneID:119710See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7904.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334307.10 ENSP00000334848.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000334307.10Link to Ensembl Protein Viewer:ENSP00000334848.5Re-query CCDS DB by Nucleotide ID:ENST00000334307Re-query CCDS DB by Protein ID:ENSP00000334848
Original member Current member EBI ENST00000446510.6 ENSP00000403937.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446510.6Link to Ensembl Protein Viewer:ENSP00000403937.3Re-query CCDS DB by Nucleotide ID:ENST00000446510Re-query CCDS DB by Protein ID:ENSP00000403937
Original member Current member EBI ENST00000532470.3 ENSP00000431374.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000532470.3Link to Ensembl Protein Viewer:ENSP00000431374.2Re-query CCDS DB by Nucleotide ID:ENST00000532470Re-query CCDS DB by Protein ID:ENSP00000431374
Original member Current member EBI ENST00000530697.6 ENSP00000432685.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000530697.6Link to Ensembl Protein Viewer:ENSP00000432685.2Re-query CCDS DB by Nucleotide ID:ENST00000530697Re-query CCDS DB by Protein ID:ENSP00000432685
Original member Current member EBI ENST00000531554.6 ENSP00000433407.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000531554.6Link to Ensembl Protein Viewer:ENSP00000433407.2Re-query CCDS DB by Nucleotide ID:ENST00000531554Re-query CCDS DB by Protein ID:ENSP00000433407
Original member Current member EBI ENST00000617650.5 ENSP00000483671.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000617650.5Link to Ensembl Protein Viewer:ENSP00000483671.1Re-query CCDS DB by Nucleotide ID:ENST00000617650Re-query CCDS DB by Protein ID:ENSP00000483671
Original member Current member EBI ENST00000676979.1 ENSP00000503448.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676979.1Link to Ensembl Protein Viewer:ENSP00000503448.1Re-query CCDS DB by Nucleotide ID:ENST00000676979Re-query CCDS DB by Protein ID:ENSP00000503448
Original member Current member EBI ENST00000678060.1 ENSP00000504720.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000678060.1Link to Ensembl Protein Viewer:ENSP00000504720.1Re-query CCDS DB by Nucleotide ID:ENST00000678060Re-query CCDS DB by Protein ID:ENSP00000504720
Original member Current member NCBI NM_001276722.2 NP_001263651.1 Accepted alive Link to Nucleotide Sequence:NM_001276722.2Link to Protein Sequence:NP_001263651.1Re-query CCDS DB by Nucleotide ID:NM_001276722Re-query CCDS DB by Protein ID:NP_001263651Link to BLAST:NP_001263651.1
Original member Current member NCBI NM_001276723.2 NP_001263652.1 Accepted alive Link to Nucleotide Sequence:NM_001276723.2Link to Protein Sequence:NP_001263652.1Re-query CCDS DB by Nucleotide ID:NM_001276723Re-query CCDS DB by Protein ID:NP_001263652Link to BLAST:NP_001263652.1
Original member Current member NCBI NM_001276724.2 NP_001263653.1 Accepted alive Link to Nucleotide Sequence:NM_001276724.2Link to Protein Sequence:NP_001263653.1Re-query CCDS DB by Nucleotide ID:NM_001276724Re-query CCDS DB by Protein ID:NP_001263653Link to BLAST:NP_001263653.1
Original member Current member NCBI NM_138787.4 NP_620142.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138787.4Link to Protein Sequence:NP_620142.2Re-query CCDS DB by Nucleotide ID:NM_138787Re-query CCDS DB by Protein ID:NP_620142Link to BLAST:NP_620142.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263651.1 221 Q86VG3-1 221 100% 0 0
NP_001263652.1 221 Q86VG3-1 221 100% 0 0
NP_001263653.1 221 Q86VG3-1 221 100% 0 0
NP_620142.2 221 Q86VG3-1 221 100% 0 0

Chromosomal Locations for CCDS 7904.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 36610104 36610239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 36633284 36633438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 36636051 36636117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 36648016 36648155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 36659019 36659186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGTCTGCCCATATGTCAGGATTGGAAATAATGGATGAAGATCAATTAATCAAAGACGTCTTGGATAAAT
TCCTTAATTGTCATGAGCAAACATATGATGAAGAATTTCTGAACACTTTTACTCATCTTTCACAAGAGGA
TCATGTGTCCAAAAGGGGAGTGTTTGGAACTGATTCTTCAGAAAACATTTTTACCTCAGCAAAAGTTACT
CATAAAAATGAAGCAGATGACTACCATCTTAGAAATAAAACCATCTTTCTTCGTACTTCATCACAATGTT
TGGAAGAACAGGTAGATAATTTCCTAGATTTAGAAGATTTGGACATGGATGAAGAGATTAAACCCCAAAT
GAGTGAGGATTTGCTGCTGCTTCCAGGAGAAGTGGAGCAGGATGTAAGCACCAGCATTCCTTCCTGTATC
CCTTTTGTGGCCCAGCCTCCTACCTGTGAAGTGAAGCCAAAGCCCAGTGTTAAAAGAATGGACAAACAGA
CGGAAGAGATACTTGGAGATGAAGTTCAACTTTTTTCACTTGATGAAGAATTTGATTATGACAATGTGAT
GCTAACCTCCAAGTTTAGTCCTGCAGAGATAGAGAACATCAAAGAGCTATGCAAGCAGCAGAAGAGAAAG
GACACCAGCCCAGACTTAGAGAAATCCTGTGACTGA

Translation (221 aa):
MSAHMSGLEIMDEDQLIKDVLDKFLNCHEQTYDEEFLNTFTHLSQEDHVSKRGVFGTDSSENIFTSAKVT
HKNEADDYHLRNKTIFLRTSSQCLEEQVDNFLDLEDLDMDEEIKPQMSEDLLLLPGEVEQDVSTSIPSCI
PFVAQPPTCEVKPKPSVKRMDKQTEEILGDEVQLFSLDEEFDYDNVMLTSKFSPAEIENIKELCKQQKRK
DTSPDLEKSCD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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