NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1506.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1506.1 Public Homo sapiens 1 ATF3 24 110 108 CCDS HistoryNCBI Gene:467Re-query CCDS DB by CCDS ID:1506.1Re-query CCDS DB by GeneID:467See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1506.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341491.9 ENSP00000344352.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341491.9Link to Ensembl Protein Viewer:ENSP00000344352.4Re-query CCDS DB by Nucleotide ID:ENST00000341491Re-query CCDS DB by Protein ID:ENSP00000344352
Original member Current member EBI ENST00000366987.6 ENSP00000355954.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366987.6Link to Ensembl Protein Viewer:ENSP00000355954.2Re-query CCDS DB by Nucleotide ID:ENST00000366987Re-query CCDS DB by Protein ID:ENSP00000355954
Original member Current member NCBI NM_001030287.4 NP_001025458.1 Accepted alive Link to Nucleotide Sequence:NM_001030287.4Link to Protein Sequence:NP_001025458.1Re-query CCDS DB by Nucleotide ID:NM_001030287Re-query CCDS DB by Protein ID:NP_001025458Link to BLAST:NP_001025458.1
Original member Current member NCBI NM_001674.4 NP_001665.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001674.4Link to Protein Sequence:NP_001665.1Re-query CCDS DB by Nucleotide ID:NM_001674Re-query CCDS DB by Protein ID:NP_001665Link to BLAST:NP_001665.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025458.1 181 P18847-1 181 100% 0 0
NP_001665.1 181 P18847-1 181 100% 0 0

Chromosomal Locations for CCDS 1506.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 212615022 212615261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212618127 212618234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212619358 212619555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (546 nt):
ATGATGCTTCAACACCCAGGCCAGGTCTCTGCCTCGGAAGTGAGTGCTTCTGCCATCGTCCCCTGCCTGT
CCCCTCCTGGGTCACTGGTGTTTGAGGATTTTGCTAACCTGACGCCCTTTGTCAAGGAAGAGCTGAGGTT
TGCCATCCAGAACAAGCACCTCTGCCACCGGATGTCCTCTGCGCTGGAATCAGTCACTGTCAGCGACAGA
CCCCTCGGGGTGTCCATCACAAAAGCCGAGGTAGCCCCTGAAGAAGATGAAAGGAAAAAGAGGCGACGAG
AAAGAAATAAGATTGCAGCTGCAAAGTGCCGAAACAAGAAGAAGGAGAAGACGGAGTGCCTGCAGAAAGA
GTCGGAGAAGCTGGAAAGTGTGAATGCTGAACTGAAGGCTCAGATTGAGGAGCTCAAGAACGAGAAGCAG
CATTTGATATACATGCTCAACCTTCATCGGCCCACGTGTATTGTCCGGGCTCAGAATGGGAGGACTCCAG
AAGATGAGAGAAACCTCTTTATCCAACAGATAAAAGAAGGAACATTGCAGAGCTAA

Translation (181 aa):
MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFAIQNKHLCHRMSSALESVTVSDR
PLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKESEKLESVNAELKAQIEELKNEKQ
HLIYMLNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH