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Report for CCDS1454.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1454.1 Public Homo sapiens 1 CDK18 24 110 108 CCDS HistoryNCBI Gene:5129Re-query CCDS DB by CCDS ID:1454.1Re-query CCDS DB by GeneID:5129See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 1454.1
This CCDS representation uses the 5'-most in-frame start codon found in the transcript. It should be noted that this start codon has a weak Kozak signal, and its conservation is restricted to primate species, squirrel, rock hyrax and armadillo. Two better conserved potential start codons with stronger Kozak signals are located two and five codons downstream, respectively. It is possible that leaky scanning by ribosomes would allow one of the downstream start codons to be used some of the time. There is no experimental evidence indicating which start codon is preferentially used in vivo.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1454.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000506784.5 ENSP00000423665.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506784.5Link to Ensembl Protein Viewer:ENSP00000423665.1Re-query CCDS DB by Nucleotide ID:ENST00000506784Re-query CCDS DB by Protein ID:ENSP00000423665
Original member Current member NCBI NM_212503.3 NP_997668.1 Accepted alive Link to Nucleotide Sequence:NM_212503.3Link to Protein Sequence:NP_997668.1Re-query CCDS DB by Nucleotide ID:NM_212503Re-query CCDS DB by Protein ID:NP_997668Link to BLAST:NP_997668.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997668.1 504 Q07002-3 504 100% 0 0

Chromosomal Locations for CCDS 1454.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 205523168 205523297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205523483 205523715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205524232 205524357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205525139 205525195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205526065 205526179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205526367 205526461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205526775 205526837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205527794 205527917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205528048 205528168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205528999 205529096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205529324 205529429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205529521 205529563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205530259 205530349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205530628 205530705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205531344 205531378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGATCATGAACAAGATGAAGAACTTTAAGCGCCGTTTCTCCCTGTCAGTGCCCCGCACTGAGACCATTG
AAGAATCCTTGGCTGAATTCACGGAGCAATTCAACCAGCTCCACAACCGGCGGAATGAGAACTTGCAGCT
CGGTCCTCTTGGCAGAGACCCCCCGCAGGAGTGCAGCACCTTCTCCCCAACAGACAGCGGGGAGGAGCCG
GGGCAGCTCTCCCCTGGCGTGCAGTTCCAGCGGCGGCAGAACCAGCGCCGCTTCTCCATGGAGGTAAGGG
CCTCTGGAGCTCTGCCCCGGCAGGTGGCAGGATGCACGCACAAGGGTGTGCACAGGAGGGCAGCTGCCTT
ACAGCCAGACTTTGACGTCAGCAAGAGGCTCTCTCTGCCCATGGATATCCGCCTGCCCCAGGAATTCCTA
CAGAAGCTACAGATGGAGAGCCCAGATCTGCCCAAGCCGCTCAGCCGCATGTCCCGCCGGGCCTCCCTGT
CAGACATTGGCTTTGGGAAACTGGAAACATACGTGAAACTGGACAAACTGGGAGAGGGCACCTATGCCAC
AGTCTTCAAAGGGCGCAGCAAACTGACGGAGAACCTTGTGGCCCTGAAAGAGATCCGGCTGGAGCACGAG
GAGGGAGCGCCCTGCACTGCCATCCGAGAGGTGTCTCTGCTGAAGAACCTGAAGCACGCCAATATTGTGA
CCCTGCATGACCTCATCCACACAGATCGGTCCCTCACCCTGGTGTTTGAGTACCTGGACAGTGACCTGAA
GCAGTATCTGGACCACTGTGGGAACCTCATGAGCATGCACAACGTCAAGATTTTCATGTTCCAGCTGCTC
CGGGGCCTCGCCTACTGTCACCACCGCAAGATCCTGCACCGGGACCTGAAGCCCCAGAACCTGCTCATCA
ACGAGAGGGGGGAGCTGAAGCTGGCCGACTTTGGACTGGCCAGGGCCAAGTCAGTGCCCACAAAGACTTA
CTCCAATGAGGTGGTGACCCTGTGGTACAGGCCCCCCGATGTGCTGCTGGGATCCACAGAGTACTCCACC
CCCATTGATATGTGGGGCGTGGGCTGCATCCACTACGAGATGGCCACAGGGAGGCCCCTCTTCCCGGGCT
CCACAGTCAAGGAGGAGCTGCACCTCATCTTTCGCCTCCTCGGGACCCCCACAGAAGAGACGTGGCCCGG
CGTGACCGCCTTCTCTGAGTTCCGCACCTACAGCTTCCCCTGCTACCTCCCGCAGCCGCTCATCAACCAC
GCGCCCAGGTTGGATACGGATGGCATCCACCTCCTGAGCAGCCTGCTCCTGTATGAATCCAAGAGTCGCA
TGTCAGCAGAGGCTGCCCTGAGTCACTCCTACTTCCGGTCTCTGGGAGAGCGTGTGCACCAGCTTGAAGA
CACTGCCTCCATCTTCTCCCTGAAGGAGATCCAGCTCCAGAAGGACCCAGGCTACCGAGGCTTGGCCTTC
CAGCAGCCAGGACGAGGGAAGAACAGGCGGCAGAGCATCTTCTGA

Translation (504 aa):
MIMNKMKNFKRRFSLSVPRTETIEESLAEFTEQFNQLHNRRNENLQLGPLGRDPPQECSTFSPTDSGEEP
GQLSPGVQFQRRQNQRRFSMEVRASGALPRQVAGCTHKGVHRRAAALQPDFDVSKRLSLPMDIRLPQEFL
QKLQMESPDLPKPLSRMSRRASLSDIGFGKLETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHE
EGAPCTAIREVSLLKNLKHANIVTLHDLIHTDRSLTLVFEYLDSDLKQYLDHCGNLMSMHNVKIFMFQLL
RGLAYCHHRKILHRDLKPQNLLINERGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYST
PIDMWGVGCIHYEMATGRPLFPGSTVKEELHLIFRLLGTPTEETWPGVTAFSEFRTYSFPCYLPQPLINH
APRLDTDGIHLLSSLLLYESKSRMSAEAALSHSYFRSLGERVHQLEDTASIFSLKEIQLQKDPGYRGLAF
QQPGRGKNRRQSIF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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