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Report for CCDS87900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87900.1 Public Mus musculus 1 Gpr52 23 108 98 CCDS HistoryNCBI Gene:620246Re-query CCDS DB by CCDS ID:87900.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87900.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238289.1 ENSMUSP00000158769.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238289.1Link to Ensembl Protein Viewer:ENSMUSP00000158769.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238289Re-query CCDS DB by Protein ID:ENSMUSP00000158769
Original member Current member NCBI NM_001146330.2 NP_001139802.1 Accepted alive Link to Nucleotide Sequence:NM_001146330.2Link to Protein Sequence:NP_001139802.1Re-query CCDS DB by Nucleotide ID:NM_001146330Re-query CCDS DB by Protein ID:NP_001139802Link to BLAST:NP_001139802.1
Original member Current member NCBI NM_001368668.1 NP_001355597.1 Accepted alive Link to Nucleotide Sequence:NM_001368668.1Link to Protein Sequence:NP_001355597.1Re-query CCDS DB by Nucleotide ID:NM_001368668Re-query CCDS DB by Protein ID:NP_001355597Link to BLAST:NP_001355597.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139802.1 361 P0C5J4 361 100% 0 0
NP_001355597.1 361 P0C5J4 361 100% 0 0

Chromosomal Locations for CCDS 87900.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 160576668 160577753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGAATGAATCCAGGTGGACTGAATGGAGGATCCTGAACATGAGCAGTAGCATTGTGAATGTGTCCGAGC
ACCACTCCTGCCCTCTTGGATTTGGTCACTACAGTGTGGAGGATGTCTGCATCTTTGAGACAGTTGTCAT
TGTCTTGCTGACATTTCTGATCATCTCTGGGAATTTAACAGTCATCTTTGTCTTTCACTGTGCTCCGCTG
TTACACCATTATACTACCAGCTACTTTATACAGACCATGGCATACGCTGACCTCCTCGTTGGAGTTACCT
GCTTGGTTCCTACTCTGTCCCTTCTTCATTACTCTACAGGTGTCCATGAGTCATTGACTTGCCAGGTGTT
TGGATATATTATTTCAGTTCTAAAAAGCGTGTCTATGGCATGTCTTGCTTGCATCAGTGTGGATCGATAT
CTTGCAATAACCAAGCCTCTATCCTACAATCAACTGGTCACTCCTTGTCGCCTGAGAATTTGCATTATTA
TGATTTGGATTTACTCCTGCCTAATTTTCTTGCCTTCCTTTTTTGGCTGGGGCAAACCTGGTTACCATGG
TGACATTTTTGAATGGTGTGCCACATCTTGGCTTACCAGTGCCTATTTTACTTGCTTTATTGTTTGTTTA
CTTTATGCTCCTGCTGCCTTGGTTGTCTGCTTCACTTACTTTCACATTTTCAAAATTTGCCGGCAGCACA
CCAAAGAGATAAATGACCGGAGGGCCAGATTCCCTAGTCACGAGGTAGAGGCCTCTAGGGAAGCAGGGCA
CAGCCCTGACCGTCGCTACGCCATGGTTTTATTTAGGATAACTAGCGTGTTTTACATGCTGTGGCTTCCA
TATATTATTTACTTTCTTCTAGAAAGTTCTCGTGTCTTGGACAATCCCACACTGTCCTTCTTAACCACCT
GGCTTGCGATAAGCAATAGTTTTTGTAACTGTGTAATATACAGCCTCTCCAACAGTGTTTTCCGCCTTGG
CCTCCGAAGGCTTTCTGAAACAATGTGCACATCTTGTGTGTGTGCGAAGGATCAGGAAGCACAAGATCCC
AAACCTAGGAGACGGGCAAATTCCTGCTCCATTTGA

Translation (361 aa):
MNESRWTEWRILNMSSSIVNVSEHHSCPLGFGHYSVEDVCIFETVVIVLLTFLIISGNLTVIFVFHCAPL
LHHYTTSYFIQTMAYADLLVGVTCLVPTLSLLHYSTGVHESLTCQVFGYIISVLKSVSMACLACISVDRY
LAITKPLSYNQLVTPCRLRICIIMIWIYSCLIFLPSFFGWGKPGYHGDIFEWCATSWLTSAYFTCFIVCL
LYAPAALVVCFTYFHIFKICRQHTKEINDRRARFPSHEVEASREAGHSPDRRYAMVLFRITSVFYMLWLP
YIIYFLLESSRVLDNPTLSFLTTWLAISNSFCNCVIYSLSNSVFRLGLRRLSETMCTSCVCAKDQEAQDP
KPRRRANSCSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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