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Report for CCDS1184.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1184.1 Public Homo sapiens 1 FCER1A 24 110 108 CCDS HistoryNCBI Gene:2205Re-query CCDS DB by CCDS ID:1184.1Re-query CCDS DB by GeneID:2205See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 1184.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368115.5 ENSP00000357097.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368115.5Link to Ensembl Protein Viewer:ENSP00000357097.1Re-query CCDS DB by Nucleotide ID:ENST00000368115Re-query CCDS DB by Protein ID:ENSP00000357097
Original member Current member EBI ENST00000693622.1 ENSP00000509626.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000693622.1Link to Ensembl Protein Viewer:ENSP00000509626.1Re-query CCDS DB by Nucleotide ID:ENST00000693622Re-query CCDS DB by Protein ID:ENSP00000509626
Original member Current member NCBI NM_001387280.1 NP_001374209.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001387280.1Link to Protein Sequence:NP_001374209.1Re-query CCDS DB by Nucleotide ID:NM_001387280Re-query CCDS DB by Protein ID:NP_001374209Link to BLAST:NP_001374209.1
Original member Current member NCBI NM_002001.4 NP_001992.1 Accepted alive Link to Nucleotide Sequence:NM_002001.4Link to Protein Sequence:NP_001992.1Re-query CCDS DB by Nucleotide ID:NM_002001Re-query CCDS DB by Protein ID:NP_001992Link to BLAST:NP_001992.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001374209.1 257 P12319 257 100% 0 0
NP_001992.1 257 P12319 257 100% 0 0

Chromosomal Locations for CCDS 1184.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 159302365 159302419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 159302854 159302874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 159303928 159304182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 159305988 159306245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 159307748 159307932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGCTCCTGCCATGGAATCCCCTACTCTACTGTGTGTAGCCTTACTGTTCTTCGCTCCAGATGGCGTGT
TAGCAGTCCCTCAGAAACCTAAGGTCTCCTTGAACCCTCCATGGAATAGAATATTTAAAGGAGAGAATGT
GACTCTTACATGTAATGGGAACAATTTCTTTGAAGTCAGTTCCACCAAATGGTTCCACAATGGCAGCCTT
TCAGAAGAGACAAATTCAAGTTTGAATATTGTGAATGCCAAATTTGAAGACAGTGGAGAATACAAATGTC
AGCACCAACAAGTTAATGAGAGTGAACCTGTGTACCTGGAAGTCTTCAGTGACTGGCTGCTCCTTCAGGC
CTCTGCTGAGGTGGTGATGGAGGGCCAGCCCCTCTTCCTCAGGTGCCATGGTTGGAGGAACTGGGATGTG
TACAAGGTGATCTATTATAAGGATGGTGAAGCTCTCAAGTACTGGTATGAGAACCACAACATCTCCATTA
CAAATGCCACAGTTGAAGACAGTGGAACCTACTACTGTACGGGCAAAGTGTGGCAGCTGGACTATGAGTC
TGAGCCCCTCAACATTACTGTAATAAAAGCTCCGCGTGAGAAGTACTGGCTACAATTTTTTATCCCATTG
TTGGTGGTGATTCTGTTTGCTGTGGACACAGGATTATTTATCTCAACTCAGCAGCAGGTCACATTTCTCT
TGAAGATTAAGAGAACCAGGAAAGGCTTCAGACTTCTGAACCCACATCCTAAGCCAAACCCCAAAAACAA
CTGA

Translation (257 aa):
MAPAMESPTLLCVALLFFAPDGVLAVPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSL
SEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDV
YKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPREKYWLQFFIPL
LVVILFAVDTGLFISTQQQVTFLLKIKRTRKGFRLLNPHPKPNPKNN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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