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Report for CCDS44169.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44169.1 Public Homo sapiens 1 SYDE2 24 110 108 CCDS HistoryNCBI Gene:84144Re-query CCDS DB by CCDS ID:44169.1Re-query CCDS DB by GeneID:84144See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44169.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341460.6 ENSP00000340594.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341460.6Link to Ensembl Protein Viewer:ENSP00000340594.5Re-query CCDS DB by Nucleotide ID:ENST00000341460Re-query CCDS DB by Protein ID:ENSP00000340594
Original member Current member NCBI NM_032184.2 NP_115560.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032184.2Link to Protein Sequence:NP_115560.1Re-query CCDS DB by Nucleotide ID:NM_032184Re-query CCDS DB by Protein ID:NP_115560Link to BLAST:NP_115560.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115560.1 1194 Q5VT97-1 1194 100% 0 0

Chromosomal Locations for CCDS 44169.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 85158750 85159249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85164526 85164757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85169044 85169225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85178146 85178272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85182098 85183200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85190057 85190752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85200252 85200996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3585 nt):
ATGCACGACCTGCCCCCTGACTCGGGCGCGCGGCGGGGCGGCAGGGGCTTGGCGGATCACAGCTTCCCCG
CGGGAGCCCGGGCTCCGGGCCAGCCGCCTTCCCGCGGCGCCGCGTACCGCCGAGCCTGCCCCCGGGACGG
GGAGCGGGGAGGCGGCGGACGCCCTCGGCAGCAGGTGTCCCCGCCCCGGTCGCCTCAGAGGGAGCCGCGG
GGAGGCCAGCTGCGGACTCCTCGGATGCGGCCGTCCTGCAGCAGAAGCCTCGAGAGCCTCCGGGTGGGTG
CCAAGCCGCCTCCCTTCCAGCGGTGGCCGAGCGACAGCTGGATCAGGTGCGGCGCGCACCGGGACTGGGA
CGAGCCCCCGCCACGTGGAGGCAGGATGGACGGCTGGAGTGGGGACCGCGCCCGGGCGGCTGCACCCACC
GGCCTCCAGCCTCCAGGCTGCAAGGACCACGGCTGCTCCTCGGGAAGCCCTTTCAGGGATCCAGCGGGGT
CCTCTGTGATACGCAGTGGCAAAGGAGACCGCCAGGAAGGCCCCTCCTTCCTCAGGCCGCCGGCAGTGAC
AGTCAAGAAGCTGCAGAAGTGGATGTACAAAGGGCGTCTGCTGTCCCTGGGAATGAAGGGTCGTGCCCGT
GGGACGGCTCCCAAAGTCACAGGAACGCAGGCAGCCTCCCCAAATGTGGGCGCTTTGAAAGTGCGTGAAA
ACCGTGTCCTGTCGGTGCCTCCAGACCAAAGAATTACGCTGACAGATTTATTTGAAAATGCCTATGGGTC
TTCAATGAAGGGAAGAGAACTTGAAGAGCTGAAGGATAATATTGAATTCAGAGGTCATAAGCCACTTAAC
AGCATCACTGTTTCAAAGAAACGCAATTGGCTATATCAGAGTACTCTGAGGCCTCTTAATCTGGAAGAAG
AAAATAAGAAATGCCAAGATAGAAGTCATTTATCCATCTCACCTGTGTCTCTACCTAAACATCAGCTATC
ACAGTCTTTCCTCAAATCATCTAAAGAGTACTGTACATATGTGGTATGTAACGCTACAAACTCTTCATTA
TCGAAAAACTGTGCTTTAGATTTTAATGAGGAAAATGATGCAGATGATGAAGGAGAAATATGGTACAATC
CCATTCCTGAGGATGATGACCTTGGTATATCAAGTGCCTTGAGTTTTGGTGAGGCCGACTCTGCTGTTCT
GAAGCTCCCTGCTGTCAATTTGAGCATGTTGTCTGGCAGTGACCTGATGAAAGCAGAGCGGCATACTGAA
GACTCACTGTGCTCTTCCGAACATGCAGGTGATATTCAGACCACACGGTCAAATGGAATGAATCCTATAC
ATCCTGCCCATTCCACAGAATTTGTGCAGCAGTACAAGCAAAAGCTAGGACACAAGACACAAGAAGGTAT
AATGGTGGAGGACAGTCCCATGTTGAAATCTCCTTTTGCAGGTTCTGGGATCCTGGCTGCTACAAATAGT
ACTGAATTGGGAATTATGGAACCATCTTCTCCAAATCCTAGCCCTGTGAAAAAAGGCAGTTCAATTAATT
GGTCATTGCCAGATAAAATAAAATCTCCACGAACTGTGAGGAAACTTTCCATGAAAATGAAAAAGTTGCC
AGAATTTAGCCGAAAGCTAAGCGTTAAGGGAACATTGAATTATATAAACAGTCCAGATAATACTCCTTCT
TTGTCTAAATATAACTGCCGAGAAGTTCATCATACTGATATTCTGCCCTCTGGGAACACAACCACCGCTG
CTAAGAGGAATGTTATAAGCCGATACCATCTTGATACCAGTGTATCCTCCCAGCAGAGCTACCAGAAGAA
AAACTCTATGAGTTCTAAGTATTCCTGCAAAGGTGGTTACCTTAGTGATGGAGACTCACCTGAACTTACA
ACTAAAGCTAGCAAACATGGATCTGAAAACAAATTTGGAAAAGGAAAAGAAATAATTTCAAATAGTTGTA
GCAAGAATGAAATAGACATTGATGCTTTTAGGCATTATAGCTTTTCTGATCAACCTAAGTGTTCACAGTA
CATATCTGGGCTCATGAGTGTACATTTCTATGGTGCTGAGGATTTAAAACCACCTCGGATAGATTCAAAA
GACGTCTTTTGTGCAATTCAGGTAGATTCAGTAAACAAAGCAAGAACAGCTTTGCTCACATGCCGAACAA
CATTTTTAGACATGGATCACACTTTCAACATAGAAATTGAAAATGCACAACATTTGAAACTAGTAGTATT
CAGTTGGGAACCCACTCCAAGAAAAAATCGAGTTTGTTGTCATGGAACTGTTGTTCTTCCCACCTTATTT
AGAGTGACAAAGACTCATCAGTTGGCTGTCAAACTTGAACCTAGAGGTCTTATTTATGTGAAAGTGACTC
TTATGGAACAGTGGGAGAATTCTCTTCATGGACTAGATATAAACCAAGAACCAATAATATTTGGAGTTGA
TATTCAAAAAGTTGTAGAGAAAGAAAATATAGGACTGATGGTGCCCCTTCTGATACAGAAATGTATTATG
GAAATTGAAAAGAGAGGCTGTCAGGTAGTAGGCCTGTATCGATTATGTGGTTCGGCAGCAGTCAAGAAAG
AACTGCGAGAGGCTTTTGAGAGAGATAGCAAAGCTGTTGGTCTGTGTGAAAACCAGTACCCAGATATAAA
TGTAATAACAGGTGTTCTTAAGGATTATTTAAGAGAACTCCCTTCTCCTCTGATAACAAAGCAGCTTTAT
GAGGCTGTATTAGATGCAATGGCAAAAAGTCCTTTGAAAATGTCATCAAATGGTTGTGAGAATGACCCAG
GTGACTCTAAGTACACTGTTGACCTGCTGGATTGTCTGCCAGAGATTGAGAAGGCAACCCTAAAGATGTT
GTTGGATCATTTGAAATTGGTGGCTTCCTATCATGAAGTGAATAAGATGACGTGCCAGAATTTGGCTGTG
TGCTTTGGACCAGTATTATTAAGTCAGAGGCAAGAGCCTTCCACCCATAACAACAGAGTCTTTACTGATT
CAGAAGAACTTGCAAGTGCTTTGGATTTTAAAAAACACATTGAAGTTCTTCATTACTTACTCCAACTCTG
GCCAGTGCAGCGTTTAACTGTCAAAAAATCAACAGACAATTTATTCCCAGAGCAGAAGTCTTCTCTGAAT
TATCTGAGGCAGAAGAAAGAACGACCTCATATGTTAAATTTGAGTGGTACTGATTCATCAGGAGTACTTA
GGCCAAGGCAAAACCGATTAGACAGTCCACTTAGCAATCGTTATGCAGGAGACTGGAGCAGCTGTGGGGA
AAACTACTTTTTAAATACAAAAGAAAATTTAAATGATGTGGATTATGATGATGTCCCTTCAGAAGATAGA
AAAATCGGAGAAAATTATAGCAAAATGGATGGGCCAGAAGTAATGATTGAACAGCCAATTCCCATGTCCA
AAGAGTGTACATTTCAGACATATTTGACAATGCAGACAGTTGAGTCTACAGTGGATCGAAAAAACAATCT
CAAAGATCTACAAGAAAGTATTGATACTTTGATTGGAAATCTGGAACGTGAGCTCAACAAAAACAAGCTT
AATATGAGTTTTTGA

Translation (1194 aa):
MHDLPPDSGARRGGRGLADHSFPAGARAPGQPPSRGAAYRRACPRDGERGGGGRPRQQVSPPRSPQREPR
GGQLRTPRMRPSCSRSLESLRVGAKPPPFQRWPSDSWIRCGAHRDWDEPPPRGGRMDGWSGDRARAAAPT
GLQPPGCKDHGCSSGSPFRDPAGSSVIRSGKGDRQEGPSFLRPPAVTVKKLQKWMYKGRLLSLGMKGRAR
GTAPKVTGTQAASPNVGALKVRENRVLSVPPDQRITLTDLFENAYGSSMKGRELEELKDNIEFRGHKPLN
SITVSKKRNWLYQSTLRPLNLEEENKKCQDRSHLSISPVSLPKHQLSQSFLKSSKEYCTYVVCNATNSSL
SKNCALDFNEENDADDEGEIWYNPIPEDDDLGISSALSFGEADSAVLKLPAVNLSMLSGSDLMKAERHTE
DSLCSSEHAGDIQTTRSNGMNPIHPAHSTEFVQQYKQKLGHKTQEGIMVEDSPMLKSPFAGSGILAATNS
TELGIMEPSSPNPSPVKKGSSINWSLPDKIKSPRTVRKLSMKMKKLPEFSRKLSVKGTLNYINSPDNTPS
LSKYNCREVHHTDILPSGNTTTAAKRNVISRYHLDTSVSSQQSYQKKNSMSSKYSCKGGYLSDGDSPELT
TKASKHGSENKFGKGKEIISNSCSKNEIDIDAFRHYSFSDQPKCSQYISGLMSVHFYGAEDLKPPRIDSK
DVFCAIQVDSVNKARTALLTCRTTFLDMDHTFNIEIENAQHLKLVVFSWEPTPRKNRVCCHGTVVLPTLF
RVTKTHQLAVKLEPRGLIYVKVTLMEQWENSLHGLDINQEPIIFGVDIQKVVEKENIGLMVPLLIQKCIM
EIEKRGCQVVGLYRLCGSAAVKKELREAFERDSKAVGLCENQYPDINVITGVLKDYLRELPSPLITKQLY
EAVLDAMAKSPLKMSSNGCENDPGDSKYTVDLLDCLPEIEKATLKMLLDHLKLVASYHEVNKMTCQNLAV
CFGPVLLSQRQEPSTHNNRVFTDSEELASALDFKKHIEVLHYLLQLWPVQRLTVKKSTDNLFPEQKSSLN
YLRQKKERPHMLNLSGTDSSGVLRPRQNRLDSPLSNRYAGDWSSCGENYFLNTKENLNDVDYDDVPSEDR
KIGENYSKMDGPEVMIEQPIPMSKECTFQTYLTMQTVESTVDRKNNLKDLQESIDTLIGNLERELNKNKL
NMSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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