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Report for CCDS325.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
325.1 Public Homo sapiens 1 RAB42 24 110 108 CCDS HistoryNCBI Gene:115273Re-query CCDS DB by CCDS ID:325.1Re-query CCDS DB by GeneID:115273See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 325.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373826.3 ENSP00000362932.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373826.3Link to Ensembl Protein Viewer:ENSP00000362932.3Re-query CCDS DB by Nucleotide ID:ENST00000373826Re-query CCDS DB by Protein ID:ENSP00000362932
Original member Current member NCBI NM_152304.3 NP_689517.1 Accepted alive Link to Nucleotide Sequence:NM_152304.3Link to Protein Sequence:NP_689517.1Re-query CCDS DB by Nucleotide ID:NM_152304Re-query CCDS DB by Protein ID:NP_689517Link to BLAST:NP_689517.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689517.1 105 Q8N4Z0-1 105 100% 0 0

Chromosomal Locations for CCDS 325.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 28593800 28594117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (318 nt):
ATGGCCACTCAGGGCCCGGACAAGGTCATCTTCCTGCTGGTTGGCCACAAGAGTGACCTGCAGAGCACCC
GCTGTGTCTCAGCCCAGGAGGCCGAGGAGCTAGCTGCCTCCCTGGGCATGGCCTTCGTGGAGACCTCGGT
TAAAAACAACTGCAATGTGGACCTGGCCTTTGACACCCTCGCTGATGCTATCCAGCAGGCCCTGCAGCAG
GGGGACATCAAGCTAGAAGAGGGCTGGGGGGGTGTCCGGCTCATCCACAAGACCCAAATCCCCAGGTCCC
CCAGCAGGAAGCAGCACTCAGGCCCATGCCAGTGTTGA

Translation (105 aa):
MATQGPDKVIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAIQQALQQ
GDIKLEEGWGGVRLIHKTQIPRSPSRKQHSGPCQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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