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Report for CCDS30272.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30272.1 Public Mus musculus X Pola1 23 108 98 CCDS HistoryNCBI Gene:18968Re-query CCDS DB by CCDS ID:30272.1Re-query CCDS DB by GeneID:18968See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30272.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006856.2 ENSMUSP00000006856.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006856.2Link to Ensembl Protein Viewer:ENSMUSP00000006856.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000006856Re-query CCDS DB by Protein ID:ENSMUSP00000006856
Original member Current member NCBI NM_008892.2 NP_032918.1 Accepted alive Link to Nucleotide Sequence:NM_008892.2Link to Protein Sequence:NP_032918.1Re-query CCDS DB by Nucleotide ID:NM_008892Re-query CCDS DB by Protein ID:NP_032918Link to BLAST:NP_032918.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032918.1 1465 P33609 1465 100% 0 0

Chromosomal Locations for CCDS 30272.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 93305671 93305816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93375591 93375684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93420567 93420683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93461369 93461500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93463294 93463472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93474313 93474487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93480479 93480610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93488095 93488227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93490743 93490948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93492719 93492811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93493549 93493581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93561368 93561490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93561870 93562019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93573108 93573232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93575779 93575878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93577497 93577616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93578077 93578206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93580722 93580897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93582018 93582134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93584586 93584675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93585844 93585905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93586998 93587082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93591406 93591560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93593819 93593957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93594774 93594848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93596115 93596231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93597218 93597330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93603201 93603373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93603462 93603663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93603910 93603997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93604407 93604499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93605351 93605413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93605848 93605963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93620505 93620585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93623819 93623915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93626488 93626612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93632069 93632111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4398 nt):
ATGGCGCCCATGCACGAAGAGGACTGTAAACTGGAGGCAAGCGCTGTGTCAGATTCAGGGAGTTTTGCAG
CTTCCCGAGCTCGGCGAGAAAAGAAATCAAAGAAAGGACGTCAAGAAGCTTTAGAGAGACTGAAAAAGGC
TAAAGCTGGGGAGAAGTATAAATACGAAGTTGAGGACCTCACAAGTGTTTATGAAGAAGTTGATGAAGAG
CAGTATTCGAAACTGGTTCAGGCCCGTCAGGATGATGACTGGATTGTGGATGACGATGGGATAGGCTATG
TGGAAGATGGCAGAGAGATTTTTGATGATGACCTTGAGGATGATGCACTTGACACCTGTGGAAAAGGAAG
TGATGGCAAAGCACACAGAAAGGACAGGAAGGATGTAAAGAAACCTTCAGTGACAAAACCAAACAATATC
AAGGCAATGTTCATTGCTAGTGCCGGGAAGAAAACTACAGATAAAGCAGTAGACTTGTCCAAGGATGATC
TGCTAGGTGACATTCTACAGGATCTAAACACTGAGACAGCTCAAATAACTCCACCACCTGTATTGATACC
AAAGAAAAAAAGATCTACTGGGGCTTTGCTCAACCCTTTTTCAGTGCACACCCCTAAGGCAATTCCTTCA
GGAAAACCTGCTTCCCCTGTCCTCAGGAATGAGCCTCTGTTAACTCCCATTCCTCTTAAACGTGCTGAAC
TTGCTGGAGAGCTGGCTCAGCCAGAATGTCCAGAAGATGAGCAGGAGCTAGGGGTAATGGAGTTTGAAGA
CGGTGACTTTGATGAGTCCATGGACACAGAGAAGGTAGATGAGAAGCCTGTGACTGCTAAGACTTGGGAC
CAAGAGACTGAGCCAGTAGAAAGGGTGGAACATGAGGCAGATCCTGAGAGGGGAACCACATCTTACTTAG
AAAATTTTCTGCCAGATGTCTCTTGTTGGGACATTGATCAGGATGATGAAAGCATACCTCAGGAAGTTCA
AGTGGATTCCAGTAATCTCCCATTGGTAAAAGGGGCAGATGATGAACAAGTGTTTCAGTTTTATTGGCTG
GATGCTTATGAAGATCCATACAACCAACCAGGTGTGGTTTTTCTGTTTGGCAAAGTGTGGATTGAATCAG
TCAAAACCCATGTGAGCTGTTGTGTTATGGTGAAAAATATTGAGCGAACACTCTACTTCCTTCCCCGTGA
AATGAAATTTGACCTAAACACAGGGAAAGAAACAGCAATTCCAGTTACAATGAAGGATGTTTATGAAGAA
TTTGATTCAAAAATTTCAGCAAAATATAAAATAATGAAGTTCAAGTCCAAGATAGTGGAAAAGAACTATG
CTTTTGAGATACCTGATGTTCCAGAAAAATCTGAGTACCTGGAAGTTAGATACTCGGCAGAAGTGCCACA
GCTTCCACAGAATTTAAAAGGAGAAACATTTTCTCATGTGTTTGGAACTAACACGTCTAGCTTGGAACTG
TTCTTGATGAATAGGAAGATCAAAGGACCTTGTTGGCTTGAAGTAAAAAATCCACAACTCTTGAATCAGC
CAATCAGTTGGTGTAAATTTGAGGTAATGGCTTTGAAACCAGACCTGGTGAATGTAATTAAGGATGTCAG
TCCTCCTCCACTTGTGGTGATGTCTTTCAGCATGAAGACAATGCAGAATGTACAGAACCATCAACATGAG
ATTATTGCTATGGCGGCTTTGGTTCATCACAGTTTTGCATTAGATAAAGCACCTCCAGAGCCTCCCTTTC
AGACACATTTCTGTGTTGTGTCTAAACCAAAGGACTGTATTTTCCCATGTGATTTCAAAGAAGTGATTTC
GAAAAAGAATATGAAGGTTGAGATCGCTGCAACAGAAAGAACCTTGATAGGATTTTTCCTTGCAAAAGTT
CACAAAATTGACCCTGACATTCTTGTGGGTCATAATATTTGTAGTTTTGAACTGGAAGTGCTGCTGCAAA
GAATTAATGAGTGCAAGGTTCCTTACTGGTCCAAGATAGGTCGGCTGAGGAGATCCAACATGCCAAAACT
TGGGAGCCGGAGTGGATTTGGTGAAAGAAATGCTACCTGTGGCCGAATGATATGTGATGTGGAAATTTCA
GCAAAAGAATTGATTCATTGTAAAAGCTACCATTTGTCTGAACTTGTTCAGCAGATTCTGAAAACTGAGA
GGATTGTAATTCCAACAGAAAATATACGAAACATGTATAGTGAATCTTCTTATCTGTTGTACCTGTTGGA
ACATATCTGGAAAGATGCCAGATTCATTTTGCAGATCATGTGTGAGCTAAATGTTCTTCCATTAGCATTG
CAGATCACTAACATCGCTGGGAACATTATGTCTAGGACACTGATGGGTGGACGATCTGAGCGAAATGAGT
TTTTGTTGCTTCATGCATTTTATGAAAACAACTATATTGTGCCTGACAAGCAGATTTTCAGAAAACCTCA
GCAAAAACTGGGAGATGAAGATGAGGAAATTGATGGGGACACCAATAAATACAAGAAAGGGCGTAAGAAA
GCAACTTACGCTGGAGGCTTGGTTTTGGACCCCAAAGTTGGTTTTTATGACAAGTTCATTTTGCTCCTGG
ATTTCAACAGTTTATATCCTTCCATCATTCAGGAATTTAACATTTGTTTTACAACAGTGCAAAGAGTTAC
TTCAGAGGTGCAGAAAGCTACAGAGGATGAGGAACAAGAACAGATCCCTGAGTTGCCAGATCCAAACTTA
GAGATGGGCATTTTGCCCAGAGAGATTCGGAAACTGGTAGAGCGGAGAAAACAAGTCAAACAGCTAATGA
AACAGCAAGATTTAAATCCAGACCTTGTTCTTCAGTATGACATCCGACAGAAGGCTTTGAAGCTCACAGC
AAACAGTATGTATGGTTGCCTGGGATTTTCGTACAGCAGATTTTATGCTAAACCACTGGCTGCCTTGGTG
ACATACAAAGGAAGGGAGATTTTGATGCATACGAAAGACATGGTACAGAAGATGAATCTTGAAGTTATTT
ATGGAGACACAGATTCAATTATGATAAATACCAATAGCACCAACCTGGAAGAAGTATTTAAGTTGGGAAA
CAAGGTAAAAAGTGAAGTGAATAAATTGTACAAACTGCTTGAAATAGACATTGATGCTGTTTTCAAGTCT
CTGCTGTTGCTGAAGAAAAAGAAATATGCTGCTCTAGTTGTTGAACCAACATCAGATGGGAATTACATTA
CCAAGCAGGAGCTGAAAGGATTAGATATAGTTAGAAGAGACTGGTGTGATCTTGCCAAGGACACTGGAAA
CTTTGTCATTGGCCAGATTCTTTCTGATCAAAGCCGGGACACCATTGTGGAAAACATTCAGAAGAGGTTA
ATAGAAATTGGAGAAAATGTGCTAAATGGCAGTGTCCCAGTGAGCCAGTTTGAAATTAACAAGGCATTGA
CAAAGGATCCCCAGGATTACCCTGATAGAAAAAGCTTACCTCATGTACATGTTGCACTGTGGATAAATTC
TCAAGGAGGCAGGAAGGTGAAAGCTGGTGATACGGTGTCCTATGTTATTTGTCAGGATGGGTCAAACCTC
ACTGCAACTCAGAGGGCCTATGCCCCAGAACAATTGCAGAAACTTGACAATTTAGCCATCGACACCCAAT
ACTACTTGGCCCAGCAGATCCACCCTGTTGTGGCTCGGATCTGTGAGCCAATAGATGGAATTGATGCTGT
ACTCATTGCATTATGGCTAGGACTTGACTCCACTCAATTTAGAGTTCATCAGTATCACAAAGATGAAGAG
AATGATGCCCTCCTTGGTGGTCCAGCACAGCTAACTGATGAAGAGAAATACAAGGATTGTGAAAAATTCA
AATGCCTTTGTCCTTCATGTGGAACTGAAAATATTTATGATAATGTCTTTGAAGGCTCGGGACTGGATAT
GGAACCCAGTTTGTATCGTTGCAGTAATGTTGATTGTAAGGTTTCACCGTTGACCTTCATGGTACAGCTG
AGCAACAAATTGATCATGGACATTAGACGGTGCATTAAAAAGTACTATGATGGCTGGTTGATATGTGAAG
AGCCAACTTGTTGCAGTCGCCTTCGACGTCTTCCCCTTCATTTCTCCCGAAATGGGCCTCTGTGTCCAGT
CTGCATGAAAGCTGTGCTTAGACCAGAGTATTCTGACAAGTCCTTGTACACCCAGCTGTGCTTTTACCGG
TACATTTTTGATGCGGACTGTGCACTGGAAAAACTTACTGAACATGAGAAAGATAAATTGAAGAAGCAGT
TTTTCCCTCTCCGAGTTCTTCAGGACTACAGAAAAGTCAAGAACATAGCAGAGCAGTTCTTGTCCTGGAG
TGGCTACTCTGAAGTGAACCTCAGCAAGCTCTTCGCCAATTACGCTGGGAAGTCCTGA

Translation (1465 aa):
MAPMHEEDCKLEASAVSDSGSFAASRARREKKSKKGRQEALERLKKAKAGEKYKYEVEDLTSVYEEVDEE
QYSKLVQARQDDDWIVDDDGIGYVEDGREIFDDDLEDDALDTCGKGSDGKAHRKDRKDVKKPSVTKPNNI
KAMFIASAGKKTTDKAVDLSKDDLLGDILQDLNTETAQITPPPVLIPKKKRSTGALLNPFSVHTPKAIPS
GKPASPVLRNEPLLTPIPLKRAELAGELAQPECPEDEQELGVMEFEDGDFDESMDTEKVDEKPVTAKTWD
QETEPVERVEHEADPERGTTSYLENFLPDVSCWDIDQDDESIPQEVQVDSSNLPLVKGADDEQVFQFYWL
DAYEDPYNQPGVVFLFGKVWIESVKTHVSCCVMVKNIERTLYFLPREMKFDLNTGKETAIPVTMKDVYEE
FDSKISAKYKIMKFKSKIVEKNYAFEIPDVPEKSEYLEVRYSAEVPQLPQNLKGETFSHVFGTNTSSLEL
FLMNRKIKGPCWLEVKNPQLLNQPISWCKFEVMALKPDLVNVIKDVSPPPLVVMSFSMKTMQNVQNHQHE
IIAMAALVHHSFALDKAPPEPPFQTHFCVVSKPKDCIFPCDFKEVISKKNMKVEIAATERTLIGFFLAKV
HKIDPDILVGHNICSFELEVLLQRINECKVPYWSKIGRLRRSNMPKLGSRSGFGERNATCGRMICDVEIS
AKELIHCKSYHLSELVQQILKTERIVIPTENIRNMYSESSYLLYLLEHIWKDARFILQIMCELNVLPLAL
QITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKK
ATYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVTSEVQKATEDEEQEQIPELPDPNL
EMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV
TYKGREILMHTKDMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDAVFKS
LLLLKKKKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRL
IEIGENVLNGSVPVSQFEINKALTKDPQDYPDRKSLPHVHVALWINSQGGRKVKAGDTVSYVICQDGSNL
TATQRAYAPEQLQKLDNLAIDTQYYLAQQIHPVVARICEPIDGIDAVLIALWLGLDSTQFRVHQYHKDEE
NDALLGGPAQLTDEEKYKDCEKFKCLCPSCGTENIYDNVFEGSGLDMEPSLYRCSNVDCKVSPLTFMVQL
SNKLIMDIRRCIKKYYDGWLICEEPTCCSRLRRLPLHFSRNGPLCPVCMKAVLRPEYSDKSLYTQLCFYR
YIFDADCALEKLTEHEKDKLKKQFFPLRVLQDYRKVKNIAEQFLSWSGYSEVNLSKLFANYAGKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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