NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS72385.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72385.1 Public Mus musculus X Fmr1 23 108 98 CCDS HistoryNCBI Gene:14265Re-query CCDS DB by CCDS ID:72385.1Re-query CCDS DB by GeneID:14265See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72385.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114653.1 ENSMUSP00000110301.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114653.1Link to Ensembl Protein Viewer:ENSMUSP00000110301.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114653Re-query CCDS DB by Protein ID:ENSMUSP00000110301
Original member NCBI NM_001290424.1 NP_001277353.1 Updated not alive Link to Nucleotide Sequence:NM_001290424.1Link to Protein Sequence:NP_001277353.1Re-query CCDS DB by Nucleotide ID:NM_001290424Re-query CCDS DB by Protein ID:NP_001277353
Current member NCBI NM_001290424.2 NP_001277353.1 Accepted alive Link to Nucleotide Sequence:NM_001290424.2Link to Protein Sequence:NP_001277353.1Re-query CCDS DB by Nucleotide ID:NM_001290424Re-query CCDS DB by Protein ID:NP_001277353Link to BLAST:NP_001277353.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277353.1 589 P35922-3 589 99.8302% 0 1

Chromosomal Locations for CCDS 72385.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 68678817 68678867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68688282 68688334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68691501 68691594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68695014 68695085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68695489 68695637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68697668 68697761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68697848 68697964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68700060 68700230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68700342 68700420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68703663 68703772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68705249 68705380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68705861 68705923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68708042 68708128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68710584 68710779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68712306 68712413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68713241 68713323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68715565 68715675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1770 nt):
ATGGAGGAGCTGGTGGTGGAAGTGCGGGGCTCCAATGGCGCTTTCTACAAGGCATTTGTAAAAGATGTCC
ATGAAGATTCTATAACAGTTGCTTTTGAAAACAACTGGCAACCAGAGAGACAGATTCCATTCCATGATGT
GAGATTCCCACCACCTGTAGGTTATAATAAAGATATAAACGAAAGTGATGAAGTTGAGGTTTATTCCAGA
GCAAATGAAAAAGAGCCTTGCTGTTGGTGGTTAGCTAAAGTGAGGATGATAAAGGGTGAGTTTTATGTGA
TAGAATATGCAGCATGTGATGCTACGTATAATGAAATTGTCACAATTGAGCGTCTACGATCTGTTAATCC
CAACAAACCTGCTACAAAAGATACTTTCCATAAGATCAAGCTGGAGGTGCCAGAAGATTTACGACAAATG
TGTGCCAAAGAATCAGCACATAAGGATTTTAAAAAGGCAGTTGGTGCCTTCTCTGTAACTTATGATCCAG
AAAATTATCAGCTGGTAATTTTGTCCATCAATGAAGTCACCTCAAAGCGAGCCCACATGTTGATTGACAT
GCACTTTCGAAGTCTGCGCACCAAGTTGTCTCTTATACTGAGAAATGAAGAAGCCAGTAAACAACTGGAG
AGTTCAAGGCAGCTTGCCTCAAGATTTCATGAACAGTTTATCGTACGAGAAGATCTGATGGGTTTAGCTA
TTGGTACTCATGGTGCTAATATTCAGCAAGCTAGAAAAGTGCCTGGCGTCACTGCTATTGATTTAGATGA
GGATACCTGCACATTTCATATTTATGGAGAGGATCAAGATGCAGTGAAAAAGGCTAGAAGCTTTCTGGAA
TTTGCTGAAGATGTCATACAGGTTCCACGAAACTTAGTAGGCAAAGTAATAGGAAAAAATGGAAAGCTGA
TTCAAGAGATCGTGGACAAGTCAGGAGTTGTGAGGGTGAGGATTGAGGCTGAAAATGAGAAAAGTGTCCC
ACAAGAAGAGGAAATTATGCCACCAAGTTCCCTACCTTCCAATAATTCAAGGGTTGGACCTAACTCCTCT
GAAGAAAAGAAACATTTAGATACAAAGGAAAACACCCATTTTTCTCAACCTAACAGTACAAAAGTCCAGA
GGGTGTTAGTGGTTTCATCAATTGTAGCAGGGGGACCCCAGAAACCTGAACCCAAGGCTTGGCAGGGTAT
GGTACCATTTGTTTTTGTGGGAACAAAAGACAGCATCGCTAATGCCACTGTTCTTTTGGATTATCACCTG
AACTATTTAAAGGAAGTAGACCAGTTGCGTTTGGAGAGATTACAAATTGATGAGCAGTTGCGACAAATTG
GAGCTAGTTCTAGACCACCACCAAATCGTACAGATAAGGAAAAAGGCTATGTGACTGATGATGGTCAAGG
AATGGGTCGAGGTAGTAGACCTTACAGAAATAGGGGGCACGGCAGACGCGGTCCTGGATATACTTCAGCT
CCAACAGAGGAAGAGAGGGAGAGCTTCCTGCGCAGAGGAGACGGACGGCGGCGTGGAGGAGGAGGAAGAG
GACAAGGAGGAAGAGGAAGAGGAGGAGGCTTCAAAGGAAACGACGATCATTCCCGAACAGATAATCGTCC
ACGTAATCCAAGAGAGGCTAAAGGAAGAACAGCTGATGGATCCCTGCAGAGTGCCTCCAGTGAAGGGAGC
CGGCTGCGCACGGGTAAAGATCGTAACCAGAAGAAGGAAAAGCCAGACAGCGTAGATGGGCTGCAACCGC
TGGTGAATGGAGTACCCTAA

Translation (589 aa):
MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPERQIPFHDVRFPPPVGYNKDINESDEVEVYSR
ANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLEVPEDLRQM
CAKESAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSKRAHMLIDMHFRSLRTKLSLILRNEEASKQLE
SSRQLASRFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLE
FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKSVPQEEEIMPPSSLPSNNSRVGPNSS
EEKKHLDTKENTHFSQPNSTKVQRVLVVSSIVAGGPQKPEPKAWQGMVPFVFVGTKDSIANATVLLDYHL
NYLKEVDQLRLERLQIDEQLRQIGASSRPPPNRTDKEKGYVTDDGQGMGRGSRPYRNRGHGRRGPGYTSA
PTEEERESFLRRGDGRRRGGGGRGQGGRGRGGGFKGNDDHSRTDNRPRNPREAKGRTADGSLQSASSEGS
RLRTGKDRNQKKEKPDSVDGLQPLVNGVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH