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Report for CCDS29995.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29995.1 Public Mus musculus X Ssxb10 23 108 98 CCDS HistoryNCBI Gene:385312Re-query CCDS DB by CCDS ID:29995.1Re-query CCDS DB by GeneID:385312See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29995.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103003.3 ENSMUSP00000100068.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103003.3Link to Ensembl Protein Viewer:ENSMUSP00000100068.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103003Re-query CCDS DB by Protein ID:ENSMUSP00000100068
Original member Current member NCBI NM_199064.1 NP_951019.1 Accepted alive Link to Nucleotide Sequence:NM_199064.1Link to Protein Sequence:NP_951019.1Re-query CCDS DB by Nucleotide ID:NM_199064Re-query CCDS DB by Protein ID:NP_951019Link to BLAST:NP_951019.1

Chromosomal Locations for CCDS 29995.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 8330039 8330107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8330563 8330677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8330974 8331063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8331539 8331588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8332200 8332275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8335537 8335649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (513 nt):
ATGGAAACAGTGAGTTCCTGTGAAAAGATCCCCATGGAAGTGCTTTATGAACCAAAGAATATCTGCAAGG
CCTTCCAGGATATTTCTACATACTTCTCTGATGAAGAGTGGGGAAAGCTGACTGAATGGCAGAAAAGTGC
CTACGTGTACATGAAAAGAAACTACATCAGAATGACCGACCTAGGGGTCACCGTGAACCAACCAGTTTTC
ATGCGCGGCAAGGAGCAGGACAAGCAATCCCTGGTTGAAGGCATTGAAGATCATGACAGTGAAGATGAAT
GCTTTGAAGGATCTTTTGGTGTGACACCGAGAAAAAGAATGAAGCTGACATCAGTGACAATAAGTATTCA
TAATGTAGAAGGAAGCCTTGCCTCTGGAGAGAATGATTCCAACTTGGCAGAACCTGGTGGCATTCAGGTC
AATGTTTGGAGCCACCGGCTGCGAGAGAGGAAGTATCGAGTGATATATTCAGAGATTAGTGATCCTGAAG
AGGAAGAAGATGATGATTACTGA

Translation (170 aa):
METVSSCEKIPMEVLYEPKNICKAFQDISTYFSDEEWGKLTEWQKSAYVYMKRNYIRMTDLGVTVNQPVF
MRGKEQDKQSLVEGIEDHDSEDECFEGSFGVTPRKRMKLTSVTISIHNVEGSLASGENDSNLAEPGGIQV
NVWSHRLRERKYRVIYSEISDPEEEEDDDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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