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Report for CCDS90644.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90644.1 Public Mus musculus 9 Lrrc78 23 108 98 CCDS HistoryNCBI Gene:102635744Re-query CCDS DB by CCDS ID:90644.1Re-query CCDS DB by GeneID:102635744See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 90644.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000190704.2 ENSMUSP00000148097.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190704.2Link to Ensembl Protein Viewer:ENSMUSP00000148097.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190704Re-query CCDS DB by Protein ID:ENSMUSP00000148097
Original member Current member NCBI NM_001370882.1 NP_001357811.1 Accepted alive Link to Nucleotide Sequence:NM_001370882.1Link to Protein Sequence:NP_001357811.1Re-query CCDS DB by Nucleotide ID:NM_001370882Re-query CCDS DB by Protein ID:NP_001357811Link to BLAST:NP_001357811.1

Chromosomal Locations for CCDS 90644.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 96486436 96486447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96492072 96492184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96494355 96494461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96496874 96497006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96506569 96506664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96513351 96513496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96514452 96514592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96517643 96517791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96519401 96519553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96521186 96521365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGCCGAGAGCGAAAGAAAGAAAACAAAAACCCAAAGGGGCAGCCCCTTCGGTGGTTCCCGCTCTTCAGA
AGTTCCTGAAGACCTACCAGAAGCACTGCGTACAGTCTCGGACCTCCGTGTGTCCCGCCATCCACAGGGA
CCTGAAGAGCAGCATTGACAGAGAGCAGATCCTCGGGAAATTTATGCTTGTGAGGGCTGGTAACTCCTCA
GCCAGCACTCTGCCCGTCTCCTTGGAACCTTTGCTCATGACCATCCGAGATGAGGGCTACACACTGGGCA
AGGAGATCTGCATCTGGGGCCTTCAGCTGACGAACCCGGAGATCGCCAGACTCGCTTTGTTTCTGGAGCA
GAAGGGGCACACCACTTGCCCAGTGACTACATTGGAAATCATTGATTGCAAGATGGATCTGTGGTCTCTG
GGGCGACTTGGGAAAGCTCTGCAGTTCAGCAGTTTGCACTTCCTGGTCCTCGACTACTGCAAGTTTGGAA
ATGAAGAACTTGAGAGTATCTTCTCAGGCCTGGAGAGCAACCGAAGGCTCCAGGGCCTCAGTATGCGCTA
CTGTGGGCTGGGGCCCCAGAGTGGGCCAAGGCTGGGCTCTGTTATCAGCCACAGCGGCATTTGTGAGCTG
CGCCTGGATGGAAATCACTTGCAGAGTTCTGGGGCCCTGGCTCTCCTCAGACCTATAGCAGAATACGCAG
AGACGCAGGGGAAGGACCAGCCTACCTTGGCACTGCTACATGCTGGAAATCCCCTTCAGCCTTCCGAAGT
GTGCCGGGGAGCAAGCTCAACTTTGAGTCAGATTATGAAATCTTCCGAAACTTTAACAGCGAAAAGAACC
TCGCAGAAGAAAAGTGGACAAGGAGGAATCAAGAAACAAGTTAAAAGCCTGGCACAAGCTGGCCCTTGGA
TCGTGACACTATGTTTGGCAGATAACAGCATAGATGGGACAGGGAGGGAGGGAGAGCCTCTGCTGGAGTT
CACTCGAACTGTAACAAGCTTGATCAAATACTCAACTCACTTAAGAGAGATGGACCTTGGGAACAATGTC
CTGGGAGAAACGGCTGCAGTGGACATCCTGGAAGCACTGAGAGTCAGGAAGACGGGTAAACTACCACCCT
TAAAAGTTACAGTCACTCCCCGGATCTCTTCGGACACCTTCAGATCTATCTGGAAACTTAGCAAGAAATC
TAATAGGAGGCGTAAAAAGAAGAAAAAGGTAAGAAACTGA

Translation (409 aa):
MPRAKERKQKPKGAAPSVVPALQKFLKTYQKHCVQSRTSVCPAIHRDLKSSIDREQILGKFMLVRAGNSS
ASTLPVSLEPLLMTIRDEGYTLGKEICIWGLQLTNPEIARLALFLEQKGHTTCPVTTLEIIDCKMDLWSL
GRLGKALQFSSLHFLVLDYCKFGNEELESIFSGLESNRRLQGLSMRYCGLGPQSGPRLGSVISHSGICEL
RLDGNHLQSSGALALLRPIAEYAETQGKDQPTLALLHAGNPLQPSEVCRGASSTLSQIMKSSETLTAKRT
SQKKSGQGGIKKQVKSLAQAGPWIVTLCLADNSIDGTGREGEPLLEFTRTVTSLIKYSTHLREMDLGNNV
LGETAAVDILEALRVRKTGKLPPLKVTVTPRISSDTFRSIWKLSKKSNRRRKKKKKVRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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