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Report for CCDS23281.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23281.1 Public Mus musculus 9 Megf11 23 108 98 CCDS HistoryNCBI Gene:214058Re-query CCDS DB by CCDS ID:23281.1Re-query CCDS DB by GeneID:214058See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 23281.1
This CCDS representation is based on the splice pattern of AK051642.1, which contains an alternative and shorter 3' end compared to homologous transcripts, including human NM_032445.2, AB300051.1 and BC126313.1. Mouse AK122555.2 encodes a longer protein, as represented in SwissProt Q80T91.3 (1091 aa), but this mRNA may possibly retain an intron at its 3' end (nts 3409-4001) compared to mouse AK160406.1 and homologous human transcripts, and thus, more evidence is needed to represent this longer protein.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 23281.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093829.8 ENSMUSP00000091349.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093829.8Link to Ensembl Protein Viewer:ENSMUSP00000091349.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000093829Re-query CCDS DB by Protein ID:ENSMUSP00000091349
Original member NCBI NM_172522.4 NP_766110.3 Updated not alive Link to Nucleotide Sequence:NM_172522.4Link to Protein Sequence:NP_766110.3Re-query CCDS DB by Nucleotide ID:NM_172522Re-query CCDS DB by Protein ID:NP_766110
Current member NCBI NM_172522.5 NP_766110.3 Accepted alive Link to Nucleotide Sequence:NM_172522.5Link to Protein Sequence:NP_766110.3Re-query CCDS DB by Nucleotide ID:NM_172522Re-query CCDS DB by Protein ID:NP_766110Link to BLAST:NP_766110.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766110.3 947 Q80T91-2 947 100% 0 0

Chromosomal Locations for CCDS 23281.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 64501529 64501623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64506028 64506129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64508708 64508808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64638235 64638481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64640014 64640134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64647815 64647951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64653070 64653282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64660340 64660514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64679179 64679299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64680234 64680397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64681390 64681492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64685880 64686026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64686363 64686497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64690002 64690130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64691795 64691923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64692355 64692483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64693761 64693997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64695364 64695482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64697307 64697373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64697807 64697908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64700097 64700153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64700363 64700376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2844 nt):
ATGGCGCCGTCTGCGGTGGGCCTCCTTGTCTTCCTTCTGCAAGCTGCTCTTGCTCTGAACCCTGAAGACC
CCAATGTGTGTAGCCACTGGGAGAGCTATGCCGTGACTGTGCAGGAGTCTTATGCACACCCCTTTGATCA
GATCTACTACACACGATGTGCAGACATCCTCAACTGGTTCAAGTGTACCCGGCACCGGATCAGCTATAAG
ACCGCGTATAGGCGCGGCCTCCGGACCATGTACCGGCGGAGGTCCCAATGCTGCCCTGGCTACTATGAGA
ACGGAGACTTCTGCATTCGCTGTGACAGCGAGCACTGGGGTCCCCACTGCAGCAACCGGTGTCAGTGTCA
GAACGGCGCCCTGTGCAACCCTATCACCGGCGCCTGCGTGTGCGCCCCGGGCTTCCGAGGCTGGCGCTGT
GAGGAACTCTGCGCTCCTGGTACTCACGGCAAGGGCTGCCAGCTGCTCTGTCAGTGCCACCATGGCGCCA
GCTGTGACCCGCGCACTGGCGAGTGCCTCTGCGCTCCTGGCTACACAGGCGTTTACTGTGAGGAGCTGTG
CCCCCCTGGGAGCCATGGAGCTCACTGTGAGCTGCGCTGCCCCTGCCAGAATGGAGGCACCTGCCACCAC
ATCACTGGCGAATGTGCCTGCCCTCCAGGCTGGACGGGAGCAGTGTGTGCCCAGCCCTGCCCTCCAGGGA
CCTTTGGCCAGAACTGTAGCCAGGACTGTCCCTGCCACCATGGAGGCCAGTGTGACCATGTGACTGGACA
ATGCCACTGTACAGCTGGATACATGGGGGACAGGTGTCAAGAAGAATGTCCCTTTGGAACGTTCGGTTTC
CTGTGCTCTCAACGCTGTGACTGCCACAATGGAGGTCAATGTTCACCAGCCACAGGGGCCTGTGAGTGTG
AGCCTGGCTACAAGGGCCCTAGCTGCCAGGAGCGGCTATGCCCTGAGGGCCTGCATGGCCCAGGCTGCAC
CTTGCCCTGCCCCTGTGACACCGAGAACACTATCAGCTGCCATCCAGTTACTGGAGCTTGTACCTGCCAA
CCAGGCTGGTCTGGCCACTACTGCAATGAGTCCTGCCCCGCCGGCTACTATGGCAACGGTTGCCAGCTAC
CCTGCACCTGCCAGAACGGTGCTGACTGCCACAGTATCACCGGGAGCTGCACTTGTGCTCCAGGCTTCAT
GGGAGAGGTGTGTGCCGTCCCCTGTGCTGCAGGGACCTATGGTCCCAACTGTTCATCTGTATGTAGCTGT
AGCAACGGCGGCACCTGTTCCCCAGTGGATGGCTCCTGCACCTGCCGAGAGGGATGGCAGGGCCTGGACT
GCTCCCTGCCTTGTCCCAGTGGGACCTGGGGCCTGAACTGCAATGAGACTTGCATCTGTGCCAATGGAGC
TGCCTGCAGCCCCTTTGATGGGTCCTGTGCCTGCACCCCAGGCTGGCTGGGGGACTCCTGTGAACTGCCC
TGCCCGGACGGCACTTTTGGGCTGAACTGCAGTGAGCATTGCGACTGCAGCCATGCTGATGGCTGTGACC
CTGTCACAGGCCACTGCTGCTGCCTGGCAGGATGGACAGGCATCCGCTGTGATAGCACGTGTCCTCCAGG
TCGCTGGGGCCCCAACTGTTCAGTGTCCTGCAGCTGTGAGAACGGAGGTTCCTGCTCCCCGGAGGACGGG
AGCTGCGAGTGTGCCCCTGGCTTTCGAGGACCCTTATGTCAGAGAATCTGCCCACCAGGATTCTACGGCC
ATGGCTGCGCCCAGCCTTGTCCCCTCTGCGTGCACAGCAGGGGGCCCTGCCACCACATCAGTGGTATCTG
TGAGTGCCTGCCAGGATTCTCTGGAGCCTTGTGCAACCAAGTGTGTGCTGGAGGGCACTTCGGGCAGGAC
TGTGCCCAGCTCTGTTCCTGTGCCAACAATGGGACCTGCAGCCCCATCGATGGCTCCTGTCAGTGCTTCC
CTGGGTGGATTGGCAAGGACTGCTCACAGGGTTGCCCTTCAGCATTTTTTGGGAAGGACTGTGGGCACAT
ATGCCAGTGTCAGAATGGAGCCAGCTGTGACCACATCACTGGGAAATGCACCTGTCGAACAGGCTTCTCT
GGCCGCCACTGTGAACAGAGATGTGCCCCTGGAACCTTTGGATATGGGTGTCAGCAGCTATGTGAGTGCA
TGAACAATGCCACTTGTGACCACGTCACTGGTACCTGTTACTGTAGCCCGGGATTCAAAGGAATCAGGTG
TGACCAAGCTGCCCTCATGATGGATGAGCTGAATCCCTACACCAAGATCAGTCCAGCTCTGGGAGCAGAG
CGGCACTCAGTGGGTGCTGTCACCGGCATCGTTCTCCTGTTGTTCCTGGTGGTGGTGCTGCTGGGCCTGT
TTGCCTGGCGACGGAGGCGGCAGAAAGAGAAAGGCCGTGACCTGGCTCCCCGAGTCTCCTACACCCCAGC
CATGAGGATGACCAGCACAGACTACTCTCTCTCAGATTTGTCTCAAAGTAGCAGCCATGCCCAGTGCTTT
TCCAATGCCAGCTACCACACACTGGCGTGTGGGGGGCCTGCCACCAGCCAGGCCAGCACTCTGGACAGGA
ACAGCCCCACCAAGCTCAGTAACAAGTCCCTTGACAGAGACACAGCAGGCTGGACCCCCTACAGCTATGT
GAACGTGTTAGACTCCCATTTCCAGATCAGTGCCCTGGAGGCCAGGTACCCGCCCGAGGACTTCTACATT
GAACTTAGACACCTCAGCCGCCATGCTGAGCCACACTCACCAGGCACTTGTGGAATGGACAGACGTCAGA
ACACATACATTATGGACAAAGGCTTCAAAGTTGCACCTGCTTAG

Translation (947 aa):
MAPSAVGLLVFLLQAALALNPEDPNVCSHWESYAVTVQESYAHPFDQIYYTRCADILNWFKCTRHRISYK
TAYRRGLRTMYRRRSQCCPGYYENGDFCIRCDSEHWGPHCSNRCQCQNGALCNPITGACVCAPGFRGWRC
EELCAPGTHGKGCQLLCQCHHGASCDPRTGECLCAPGYTGVYCEELCPPGSHGAHCELRCPCQNGGTCHH
ITGECACPPGWTGAVCAQPCPPGTFGQNCSQDCPCHHGGQCDHVTGQCHCTAGYMGDRCQEECPFGTFGF
LCSQRCDCHNGGQCSPATGACECEPGYKGPSCQERLCPEGLHGPGCTLPCPCDTENTISCHPVTGACTCQ
PGWSGHYCNESCPAGYYGNGCQLPCTCQNGADCHSITGSCTCAPGFMGEVCAVPCAAGTYGPNCSSVCSC
SNGGTCSPVDGSCTCREGWQGLDCSLPCPSGTWGLNCNETCICANGAACSPFDGSCACTPGWLGDSCELP
CPDGTFGLNCSEHCDCSHADGCDPVTGHCCCLAGWTGIRCDSTCPPGRWGPNCSVSCSCENGGSCSPEDG
SCECAPGFRGPLCQRICPPGFYGHGCAQPCPLCVHSRGPCHHISGICECLPGFSGALCNQVCAGGHFGQD
CAQLCSCANNGTCSPIDGSCQCFPGWIGKDCSQGCPSAFFGKDCGHICQCQNGASCDHITGKCTCRTGFS
GRHCEQRCAPGTFGYGCQQLCECMNNATCDHVTGTCYCSPGFKGIRCDQAALMMDELNPYTKISPALGAE
RHSVGAVTGIVLLLFLVVVLLGLFAWRRRRQKEKGRDLAPRVSYTPAMRMTSTDYSLSDLSQSSSHAQCF
SNASYHTLACGGPATSQASTLDRNSPTKLSNKSLDRDTAGWTPYSYVNVLDSHFQISALEARYPPEDFYI
ELRHLSRHAEPHSPGTCGMDRRQNTYIMDKGFKVAPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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