NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52833.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52833.1 Public Mus musculus 9 Megf11 23 108 98 CCDS HistoryNCBI Gene:214058Re-query CCDS DB by CCDS ID:52833.1Re-query CCDS DB by GeneID:214058See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52833.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164113.7 ENSMUSP00000128672.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164113.7Link to Ensembl Protein Viewer:ENSMUSP00000128672.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164113Re-query CCDS DB by Protein ID:ENSMUSP00000128672
Original member NCBI NM_001134399.1 NP_001127871.1 Updated not alive Link to Nucleotide Sequence:NM_001134399.1Link to Protein Sequence:NP_001127871.1Re-query CCDS DB by Nucleotide ID:NM_001134399Re-query CCDS DB by Protein ID:NP_001127871
Current member NCBI NM_001134399.2 NP_001127871.1 Accepted alive Link to Nucleotide Sequence:NM_001134399.2Link to Protein Sequence:NP_001127871.1Re-query CCDS DB by Nucleotide ID:NM_001134399Re-query CCDS DB by Protein ID:NP_001127871Link to BLAST:NP_001127871.1

Chromosomal Locations for CCDS 52833.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 64501529 64501623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64506028 64506129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64508708 64508808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64544594 64544686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64638235 64638481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64640014 64640134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64647815 64647951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64653070 64653282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64660340 64660514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64679179 64679299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64680234 64680397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64681390 64681492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64685880 64686026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64686363 64686497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64690002 64690130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64691795 64691923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64692355 64692483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64693761 64693997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64695364 64695482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64697307 64697373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64697807 64697908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64700097 64700153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64705727 64705933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64706527 64706684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3288 nt):
ATGGCGCCGTCTGCGGTGGGCCTCCTTGTCTTCCTTCTGCAAGCTGCTCTTGCTCTGAACCCTGAAGACC
CCAATGTGTGTAGCCACTGGGAGAGCTATGCCGTGACTGTGCAGGAGTCTTATGCACACCCCTTTGATCA
GATCTACTACACACGATGTGCAGACATCCTCAACTGGTTCAAGTGTACCCGGCACCGGATCAGCTATAAG
ACCGCGTATAGGCGCGGCCTCCGGACCATGTACCGGCGGAGGTCCCAATGCTGCCCTGGCTACTATGAGA
ACGGAGACTTCTGCATTCCTCTGTGTACCGAGGAGTGCATGCACGGCCGCTGTGTCTCTCCCGATACCTG
CCACTGTGAGCCTGGATGGGGAGGCCCTGACTGCTCCAGCGGCTGTGACAGCGAGCACTGGGGTCCCCAC
TGCAGCAACCGGTGTCAGTGTCAGAACGGCGCCCTGTGCAACCCTATCACCGGCGCCTGCGTGTGCGCCC
CGGGCTTCCGAGGCTGGCGCTGTGAGGAACTCTGCGCTCCTGGTACTCACGGCAAGGGCTGCCAGCTGCT
CTGTCAGTGCCACCATGGCGCCAGCTGTGACCCGCGCACTGGCGAGTGCCTCTGCGCTCCTGGCTACACA
GGCGTTTACTGTGAGGAGCTGTGCCCCCCTGGGAGCCATGGAGCTCACTGTGAGCTGCGCTGCCCCTGCC
AGAATGGAGGCACCTGCCACCACATCACTGGCGAATGTGCCTGCCCTCCAGGCTGGACGGGAGCAGTGTG
TGCCCAGCCCTGCCCTCCAGGGACCTTTGGCCAGAACTGTAGCCAGGACTGTCCCTGCCACCATGGAGGC
CAGTGTGACCATGTGACTGGACAATGCCACTGTACAGCTGGATACATGGGGGACAGGTGTCAAGAAGAAT
GTCCCTTTGGAACGTTCGGTTTCCTGTGCTCTCAACGCTGTGACTGCCACAATGGAGGTCAATGTTCACC
AGCCACAGGGGCCTGTGAGTGTGAGCCTGGCTACAAGGGCCCTAGCTGCCAGGAGCGGCTATGCCCTGAG
GGCCTGCATGGCCCAGGCTGCACCTTGCCCTGCCCCTGTGACACCGAGAACACTATCAGCTGCCATCCAG
TTACTGGAGCTTGTACCTGCCAACCAGGCTGGTCTGGCCACTACTGCAATGAGTCCTGCCCCGCCGGCTA
CTATGGCAACGGTTGCCAGCTACCCTGCACCTGCCAGAACGGTGCTGACTGCCACAGTATCACCGGGAGC
TGCACTTGTGCTCCAGGCTTCATGGGAGAGGTGTGTGCCGTCCCCTGTGCTGCAGGGACCTATGGTCCCA
ACTGTTCATCTGTATGTAGCTGTAGCAACGGCGGCACCTGTTCCCCAGTGGATGGCTCCTGCACCTGCCG
AGAGGGATGGCAGGGCCTGGACTGCTCCCTGCCTTGTCCCAGTGGGACCTGGGGCCTGAACTGCAATGAG
ACTTGCATCTGTGCCAATGGAGCTGCCTGCAGCCCCTTTGATGGGTCCTGTGCCTGCACCCCAGGCTGGC
TGGGGGACTCCTGTGAACTGCCCTGCCCGGACGGCACTTTTGGGCTGAACTGCAGTGAGCATTGCGACTG
CAGCCATGCTGATGGCTGTGACCCTGTCACAGGCCACTGCTGCTGCCTGGCAGGATGGACAGGCATCCGC
TGTGATAGCACGTGTCCTCCAGGTCGCTGGGGCCCCAACTGTTCAGTGTCCTGCAGCTGTGAGAACGGAG
GTTCCTGCTCCCCGGAGGACGGGAGCTGCGAGTGTGCCCCTGGCTTTCGAGGACCCTTATGTCAGAGAAT
CTGCCCACCAGGATTCTACGGCCATGGCTGCGCCCAGCCTTGTCCCCTCTGCGTGCACAGCAGGGGGCCC
TGCCACCACATCAGTGGTATCTGTGAGTGCCTGCCAGGATTCTCTGGAGCCTTGTGCAACCAAGTGTGTG
CTGGAGGGCACTTCGGGCAGGACTGTGCCCAGCTCTGTTCCTGTGCCAACAATGGGACCTGCAGCCCCAT
CGATGGCTCCTGTCAGTGCTTCCCTGGGTGGATTGGCAAGGACTGCTCACAGGGTTGCCCTTCAGCATTT
TTTGGGAAGGACTGTGGGCACATATGCCAGTGTCAGAATGGAGCCAGCTGTGACCACATCACTGGGAAAT
GCACCTGTCGAACAGGCTTCTCTGGCCGCCACTGTGAACAGAGATGTGCCCCTGGAACCTTTGGATATGG
GTGTCAGCAGCTATGTGAGTGCATGAACAATGCCACTTGTGACCACGTCACTGGTACCTGTTACTGTAGC
CCGGGATTCAAAGGAATCAGGTGTGACCAAGCTGCCCTCATGATGGATGAGCTGAATCCCTACACCAAGA
TCAGTCCAGCTCTGGGAGCAGAGCGGCACTCAGTGGGTGCTGTCACCGGCATCGTTCTCCTGTTGTTCCT
GGTGGTGGTGCTGCTGGGCCTGTTTGCCTGGCGACGGAGGCGGCAGAAAGAGAAAGGCCGTGACCTGGCT
CCCCGAGTCTCCTACACCCCAGCCATGAGGATGACCAGCACAGACTACTCTCTCTCAGATTTGTCTCAAA
GTAGCAGCCATGCCCAGTGCTTTTCCAATGCCAGCTACCACACACTGGCGTGTGGGGGGCCTGCCACCAG
CCAGGCCAGCACTCTGGACAGGAACAGCCCCACCAAGCTCAGTAACAAGTCCCTTGACAGAGACACAGCA
GGCTGGACCCCCTACAGCTATGTGAACGTGTTAGACTCCCATTTCCAGATCAGTGCCCTGGAGGCCAGGT
ACCCGCCCGAGGACTTCTACATTGAACTTAGACACCTCAGCCGCCATGCTGAGCCACACTCACCAGGCAC
TTGTGGAATGGACAGACGTCAGAACACATACATTATGGACAAAGGCTTCAAAGATTACATGAAAGAATCT
GTGTGCAGTTCTAGCACTTGCTCCTTGAACAGCAGTGAAAACCCTTACGCCACAATTAAGGACCCACCCA
TCCTCACCTGCAAGCTTCCAGAAAGCAGTTATGTAGAAATGAAGTCACCTGTGCACTTGGGGTCTCCGTA
CACAGATGTGCCATCCTTGTCGACATCTAATAAAAATATATATGAAGTTGAGCCCACAGTCAGTGTGGTC
CAAGAAGGCCGAGGTCATAACTCCAGCTATATCCAGAATCCATACGACCTACCTAAGAACAGCCATATTC
CTGGTCACTATGACCTCCTCCCAGTAAGACAGAGCCCTGCCCATGGGCCCTTCCAGGAAAAGCAGTAA

Translation (1095 aa):
MAPSAVGLLVFLLQAALALNPEDPNVCSHWESYAVTVQESYAHPFDQIYYTRCADILNWFKCTRHRISYK
TAYRRGLRTMYRRRSQCCPGYYENGDFCIPLCTEECMHGRCVSPDTCHCEPGWGGPDCSSGCDSEHWGPH
CSNRCQCQNGALCNPITGACVCAPGFRGWRCEELCAPGTHGKGCQLLCQCHHGASCDPRTGECLCAPGYT
GVYCEELCPPGSHGAHCELRCPCQNGGTCHHITGECACPPGWTGAVCAQPCPPGTFGQNCSQDCPCHHGG
QCDHVTGQCHCTAGYMGDRCQEECPFGTFGFLCSQRCDCHNGGQCSPATGACECEPGYKGPSCQERLCPE
GLHGPGCTLPCPCDTENTISCHPVTGACTCQPGWSGHYCNESCPAGYYGNGCQLPCTCQNGADCHSITGS
CTCAPGFMGEVCAVPCAAGTYGPNCSSVCSCSNGGTCSPVDGSCTCREGWQGLDCSLPCPSGTWGLNCNE
TCICANGAACSPFDGSCACTPGWLGDSCELPCPDGTFGLNCSEHCDCSHADGCDPVTGHCCCLAGWTGIR
CDSTCPPGRWGPNCSVSCSCENGGSCSPEDGSCECAPGFRGPLCQRICPPGFYGHGCAQPCPLCVHSRGP
CHHISGICECLPGFSGALCNQVCAGGHFGQDCAQLCSCANNGTCSPIDGSCQCFPGWIGKDCSQGCPSAF
FGKDCGHICQCQNGASCDHITGKCTCRTGFSGRHCEQRCAPGTFGYGCQQLCECMNNATCDHVTGTCYCS
PGFKGIRCDQAALMMDELNPYTKISPALGAERHSVGAVTGIVLLLFLVVVLLGLFAWRRRRQKEKGRDLA
PRVSYTPAMRMTSTDYSLSDLSQSSSHAQCFSNASYHTLACGGPATSQASTLDRNSPTKLSNKSLDRDTA
GWTPYSYVNVLDSHFQISALEARYPPEDFYIELRHLSRHAEPHSPGTCGMDRRQNTYIMDKGFKDYMKES
VCSSSTCSLNSSENPYATIKDPPILTCKLPESSYVEMKSPVHLGSPYTDVPSLSTSNKNIYEVEPTVSVV
QEGRGHNSSYIQNPYDLPKNSHIPGHYDLLPVRQSPAHGPFQEKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH