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Report for CCDS23012.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23012.1 Public Mus musculus 9 Or8b1c 23 108 98 CCDS HistoryNCBI Gene:258800Re-query CCDS DB by CCDS ID:23012.1Re-query CCDS DB by GeneID:258800See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23012.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051111.2 ENSMUSP00000057998.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051111.2Link to Ensembl Protein Viewer:ENSMUSP00000057998.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000051111Re-query CCDS DB by Protein ID:ENSMUSP00000057998
Original member Current member EBI ENSMUST00000214377.1 ENSMUSP00000150357.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214377.1Link to Ensembl Protein Viewer:ENSMUSP00000150357.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214377Re-query CCDS DB by Protein ID:ENSMUSP00000150357
Original member Current member NCBI NM_146804.2 NP_667015.2 Accepted alive Link to Nucleotide Sequence:NM_146804.2Link to Protein Sequence:NP_667015.2Re-query CCDS DB by Nucleotide ID:NM_146804Re-query CCDS DB by Protein ID:NP_667015Link to BLAST:NP_667015.2

Chromosomal Locations for CCDS 23012.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 38472749 38473681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGGTTTTGAAAATGGCTCTTCAGTGACTGAATTCATTCTGGTGGGATTAACCAAGGAGTCCGATCTCC
AGTGCCCCCTCTTCATCCTGTTTCTAATGATGTATGTGGTCACTGTGCTGGGAAATCAGGGTTTGATTAG
CTTAATTGGACTGAACTCTCATCTCCACACTCCAATGTACTTTTTCCTCTTTAACTTGTCCTTTGTTGAC
CTCTGGTACTCTTCTGTTTTCACACCCAAAATGCTGGAGAGCTTTATATCAGAGAAGAATACTATTTCCT
ACAGAGGATGCATGGCACAGCTTTTCTTTTTCTGTTTTTTCTCCATCTCTGAGTGTTACATTTTGACCTC
AATGGCCTATGATCGCTATGTGGCCATTTGTAACCCACTCTTGTATAATATTGTCATGTCTCCTAAACAA
TGTTTGATCCTTATGTTTAGTTCATACATGATGGCATTTTCTGGTGCCATGGCTCACACGGGATGCATGC
TGAGACTGACCTTCTGTGATGCTAACACCATCAATCACTACTTCTGTGACATCCTCCCTTTGCTTCAGCT
CTCCTGCACCAGCACCTATGTCAATGAACTGGAGGTATTTGTTGTTGTGGGCATCAACATCATTGTGCCC
ACTATCACCATCTTTATCTCTTATGGTTTTATCATCGCAAGTATTTTTCGTATCAGCTCCAAGGAGGACA
GGTCCAAAGCCTTCAGCACCTGCAGCTCCCACATAATTGCAGTTTCTCTGTTCTTTGGATCAGGTGCATT
TATGTATCTCAAACCATCTTCTGCTGAGTCAATGAATGAAGGCAAAATCTCCTCTATCTTTTATACCAAT
ACAGTTCCTCTGCTGAATCCCTTAATCTACAGCTTGAGGAACAAAGATGTTAAAGATGCCTTGATAAAGA
CCCTGAGTAAGAGAAAGCGTTAA

Translation (310 aa):
MGFENGSSVTEFILVGLTKESDLQCPLFILFLMMYVVTVLGNQGLISLIGLNSHLHTPMYFFLFNLSFVD
LWYSSVFTPKMLESFISEKNTISYRGCMAQLFFFCFFSISECYILTSMAYDRYVAICNPLLYNIVMSPKQ
CLILMFSSYMMAFSGAMAHTGCMLRLTFCDANTINHYFCDILPLLQLSCTSTYVNELEVFVVVGINIIVP
TITIFISYGFIIASIFRISSKEDRSKAFSTCSSHIIAVSLFFGSGAFMYLKPSSAESMNEGKISSIFYTN
TVPLLNPLIYSLRNKDVKDALIKTLSKRKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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