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Report for CCDS22979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22979.1 Public Mus musculus 9 Esam 23 108 98 CCDS HistoryNCBI Gene:69524Re-query CCDS DB by CCDS ID:22979.1Re-query CCDS DB by GeneID:69524See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22979.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002011.13 ENSMUSP00000002011.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002011.13Link to Ensembl Protein Viewer:ENSMUSP00000002011.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000002011Re-query CCDS DB by Protein ID:ENSMUSP00000002011
Original member Current member NCBI NM_027102.3 NP_081378.1 Accepted alive Link to Nucleotide Sequence:NM_027102.3Link to Protein Sequence:NP_081378.1Re-query CCDS DB by Nucleotide ID:NM_027102Re-query CCDS DB by Protein ID:NP_081378Link to BLAST:NP_081378.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081378.1 394 Q925F2 394 100% 0 0

Chromosomal Locations for CCDS 22979.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 37528221 37528290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37531488 37531675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37534153 37534354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37534538 37534693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37536598 37536720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37537006 37537132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37537464 37537782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1185 nt):
ATGATTCTTCAGGCTGGAACCCCCGAGACCAGCTTGCTGCGGGTTTTGTTCCTGGGACTGAGTACCCTTG
CTGCCTTCTCCCGAGCTCAGATGGAGTTGCACGTGCCCCCGGGCCTCAACAAATTGGAAGCGGTAGAGGG
AGAAGAAGTGGTGCTCCCCGCCTGGTACACGATGGCACGGGAGGAGTCGTGGTCCCACCCCCGGGAGGTG
CCCATCCTGATCTGGTTCTTGGAACAAGAAGGGAAGGAACCAAACCAGGTGTTGTCTTACATTAATGGAG
TCATGACAAATAAACCTGGAACAGCCCTGGTCCACTCTATCTCTTCACGGAATGTGTCCCTGCGCCTGGG
GGCACTCCAGGAGGGAGACTCTGGGACTTACCGCTGTTCTGTCAATGTGCAGAATGATGAAGGCAAAAGT
ATAGGCCACAGCATCAAAAGCATAGAGCTCAAAGTGCTGGTTCCTCCAGCTCCTCCATCCTGTAGTTTAC
AGGGTGTACCCTATGTCGGGACCAATGTGACCCTGAACTGCAAGTCCCCAAGGAGTAAACCTACTGCTCA
GTACCAGTGGGAGAGGCTGGCCCCATCCTCCCAGGTCTTCTTTGGACCAGCCTTAGATGCTGTTCGTGGA
TCTTTAAAGCTCACTAACCTTTCCATTGCCATGTCTGGAGTCTATGTCTGCAAGGCTCAAAACAGAGTGG
GCTTTGCCAAGTGCAACGTGACCTTGGACGTGATGACAGGGTCCAAGGCTGCAGTGGTCGCTGGAGCAGT
TGTGGGCACTTTTGTTGGGTTGGTGCTGATAGCTGGGCTGGTCCTGTTGTACCAGCGCCGGAGCAAGACC
TTGGAAGAGCTGGCCAATGATATCAAGGAAGATGCCATTGCTCCCCGGACCTTGCCTTGGACCAAAGGCT
CAGACACAATCTCCAAGAATGGGACACTTTCTTCGGTCACCTCAGCACGAGCTCTGCGGCCACCCAAGGC
TGCTCCTCCAAGACCTGGCACATTTACTCCCACACCCAGTGTCTCTAGCCAGGCCCTGTCCTCACCAAGA
CTGCCCAGGGTAGATGAACCCCCACCTCAGGCAGTGTCCCTGACCCCAGGTGGGGTTTCTTCTTCTGCTC
TGAGCCGCATGGGTGCTGTGCCTGTGATGGTGCCTGCACAGAGTCAGGCTGGGTCTCTTGTGTGA

Translation (394 aa):
MILQAGTPETSLLRVLFLGLSTLAAFSRAQMELHVPPGLNKLEAVEGEEVVLPAWYTMAREESWSHPREV
PILIWFLEQEGKEPNQVLSYINGVMTNKPGTALVHSISSRNVSLRLGALQEGDSGTYRCSVNVQNDEGKS
IGHSIKSIELKVLVPPAPPSCSLQGVPYVGTNVTLNCKSPRSKPTAQYQWERLAPSSQVFFGPALDAVRG
SLKLTNLSIAMSGVYVCKAQNRVGFAKCNVTLDVMTGSKAAVVAGAVVGTFVGLVLIAGLVLLYQRRSKT
LEELANDIKEDAIAPRTLPWTKGSDTISKNGTLSSVTSARALRPPKAAPPRPGTFTPTPSVSSQALSSPR
LPRVDEPPPQAVSLTPGGVSSSALSRMGAVPVMVPAQSQAGSLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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