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Report for CCDS90438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90438.1 Public Mus musculus 8 Nup93 23 108 98 CCDS HistoryNCBI Gene:71805Re-query CCDS DB by CCDS ID:90438.1Re-query CCDS DB by GeneID:71805See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90438.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000211822.1 ENSMUSP00000148458.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211822.1Link to Ensembl Protein Viewer:ENSMUSP00000148458.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211822Re-query CCDS DB by Protein ID:ENSMUSP00000148458
Original member NCBI NM_001357268.1 NP_001344197.1 Updated not alive Link to Nucleotide Sequence:NM_001357268.1Link to Protein Sequence:NP_001344197.1Re-query CCDS DB by Nucleotide ID:NM_001357268Re-query CCDS DB by Protein ID:NP_001344197
Current member NCBI NM_001357268.2 NP_001344197.1 Accepted alive Link to Nucleotide Sequence:NM_001357268.2Link to Protein Sequence:NP_001344197.1Re-query CCDS DB by Nucleotide ID:NM_001357268Re-query CCDS DB by Protein ID:NP_001344197Link to BLAST:NP_001344197.1

Chromosomal Locations for CCDS 90438.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 94286498 94286617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94292668 94292742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94295021 94295110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94296450 94296589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94300760 94300892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94302068 94302225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94303600 94303765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94304160 94304253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94305240 94305431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94306025 94306151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94306274 94306346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94306602 94306646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94307841 94307957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94308904 94309022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94309588 94309705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94310299 94310382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94311533 94311661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94314585 94314680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94316954 94316977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2100 nt):
ATGGCTGAGGAGTATCATCGAGAATCAATGCTGGTCGAGTGGGAACAAGTGAAACAAAGGATTCTGCACA
CACTGCTGGCGTCGGGAGAGGATGCCCTTGACTTCACCCAAGAAAGTGAGCCGAGTTACATCGGTGATGT
GAATCCCCCTGGGCGAAGCTCTCTGGATAGCATTGAGATGGCCTATGCCCGGCAGATCTATATCTATAAC
GAGAAGATTGTGAGTGGACACCTACAGCCTAACCTGGTGGACCTGTGTGCCTCTGTCGCAGAGCTGGATG
ACAAGAGCATTTCTGACATGTGGGCCATGGTAAAACAAATGACAGATGTGGTGCTGACACCAGCAACTGA
CGCCCTGAAGAGCCGGAGCAGTGTGGAAGTGCGTATGGACTTTGTCAAGCAAGCCTTGGGATATCTTGAG
CAGAGTTATAAGAATTACACCCTTGTGACTGTCTTCGGAAATCTGCATCAGGCACAGCTGGGCGGTGTGC
CTGGGACTTACCAGCTGGTTCGGAGTTTCCTAAACATTAAACTGCCAGCTCCTTCACCAGGACTTCAGGA
TGGAGAGGTAGAAGGCCATCCTGTCTGGGCATTAATTTATTACTGCATGCGCTGTGGAGACCTGCTTGCC
GCATCACAAGTCGTCAGTCGAGCCCAGCACCAGCTTGGGGAATTTAAAACTTGGTTCCAGGAGTACATGA
ACAGCAAGGATAGAAGATTGTCTCCAGCTACAGAAAACAAACTCCGACTTCACTACCGCAGAGCCCTCAG
GAACAACACAGACCCCTACAAGAGAGCTGTGTACTGTATTATTGGGAGATGCGATATCACCGACAATCAG
AGTGAAGTAGCCGACAAGACTGAGGACTACCTATGGTTAAAATTGAACCAGGTGTGTTTTGATGATGACG
GCACCAGCTCACCACAAGACAGGCTCACTCTCTCACAGTTCCAGAAGCAGCTGCTAGAAGACTATGGCGA
GTCCCACTTCACGGTGAACCAGCAGCCCTTCCTCTACTTTCAAGTGCTGTTCCTGACTGCACAGTTTGAA
GCTGCCATTGCCTTCCTCTTCCGCATGGAGCGGCTGCGCTGCCATGCTGTCCATGTGGCCCTGGTGCTGT
TTGAGCTAAAGCTGCTTTTAAAGTCCTCTGGACAGAGTGCTCAACTCCTCAGCCACGAGCCTGGCGACCC
TCCCTGCATGCGACGGCTGAACTTTGTGCGTCTGCTCATGCTCTACACCCGCAAGTTTGAGTCCACGGAC
CCAAGAGAAGCCCTCCAGTACTTTTACTTCCTCAGGGATGAGAAAGACAGTCAAGGAGAAAACATGTTTC
TGCGCTGTGTGAGCGAGCTTGTGATAGAAAGTCGAGAGTTTGATATGATTCTTGGAAAACTAGAGAACGA
TGGAAGTAGAAAGCCTGGAGTTATAGATAAGTTTACCAGTGACACAAAGCCTATTATCAACAAAGTTGCT
TCGGTGGCAGAAAACAAAGGACTGTTTGAAGAGGCAGCGAAGCTTTATGACCTTGCTAAGAATGCTGACA
AGGTGCTGGAGCTGATGAACAAGCTGCTAAGCCCTGTTGTCCCACAGATCAGCGCCCCACAGTCTAACAA
AGAAAGGCTGAAGAACATGGCCCTCTCCATTGCGGAGAGGTACAGAGCTCAGGGAATAAGTGCAAATAAG
TTTGTGGACTCTACATTCTATCTCCTCTTGGACCTGATCACCTTTTTTGACGAGTATCACAGTGGTCATA
TTGACAGAGCCTTTGATATTATTGACCGCTTGAAGCTGGTGCCTCTGAATCAGGAGAGTGTGGAAGAAAG
GGTGGCTGCCTTCAGAAACTTCAGTGATGAAATCAGACACAACCTCTCAGAAGTTCTTCTCGCCACCATG
AACATCCTGTTCACACAGTTTAAGAGGCTCAAAGGAACAAGTCCATCTTCAGCAACCAGGCCCCAGCGAG
TCATTGAAGACCGTGACTCTCAACTCCGAAGTCAAGCCAGAGCCCTGATTACCTTTGCTGGGATGATACC
GTACCGGACGTCGGGGGACACTAATGCCAGGCTGGTGCAGATGGAGCTCCTGAGCTGGGAAGTTCATTGA

Translation (699 aa):
MAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPSYIGDVNPPGRSSLDSIEMAYARQIYIYN
EKIVSGHLQPNLVDLCASVAELDDKSISDMWAMVKQMTDVVLTPATDALKSRSSVEVRMDFVKQALGYLE
QSYKNYTLVTVFGNLHQAQLGGVPGTYQLVRSFLNIKLPAPSPGLQDGEVEGHPVWALIYYCMRCGDLLA
ASQVVSRAQHQLGEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDITDNQ
SEVADKTEDYLWLKLNQVCFDDDGTSSPQDRLTLSQFQKQLLEDYGESHFTVNQQPFLYFQVLFLTAQFE
AAIAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCMRRLNFVRLLMLYTRKFESTD
PREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILGKLENDGSRKPGVIDKFTSDTKPIINKVA
SVAENKGLFEEAAKLYDLAKNADKVLELMNKLLSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANK
FVDSTFYLLLDLITFFDEYHSGHIDRAFDIIDRLKLVPLNQESVEERVAAFRNFSDEIRHNLSEVLLATM
NILFTQFKRLKGTSPSSATRPQRVIEDRDSQLRSQARALITFAGMIPYRTSGDTNARLVQMELLSWEVH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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