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Report for CCDS52582.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52582.1 Public Mus musculus 8 Use1 23 108 98 CCDS HistoryNCBI Gene:67023Re-query CCDS DB by CCDS ID:52582.1Re-query CCDS DB by GeneID:67023See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52582.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110053.8 ENSMUSP00000105680.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110053.8Link to Ensembl Protein Viewer:ENSMUSP00000105680.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110053Re-query CCDS DB by Protein ID:ENSMUSP00000105680
Original member Current member NCBI NM_001145780.1 NP_001139252.1 Accepted alive Link to Nucleotide Sequence:NM_001145780.1Link to Protein Sequence:NP_001139252.1Re-query CCDS DB by Nucleotide ID:NM_001145780Re-query CCDS DB by Protein ID:NP_001139252Link to BLAST:NP_001139252.1

Chromosomal Locations for CCDS 52582.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 71367037 71367078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71367235 71367369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71367644 71367693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71367770 71367848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71367959 71368111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71368550 71368562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71368850 71368877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71369132 71369303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71369527 71369709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGGACTACAGAGACTCTGCTTCAAAAAACGAAAAAGGCCAGATGGCGCAGGCGGAAGGAGCCTATCATC
GCCCGCTGGCGACGTCGCGGTTGGAGTTGAACCTGGTACGGCTGCTTTGTCGCTGTGAGTCGATGGCGGC
AGAAAAACGAGAACCGGACGAGTGGCGACTGGAGAAGTATGTGGGTGCCCTGGAAGACATGCTGCAGGCC
CTGAAAGTTCAAGCAAGTAAACCGGCCTCAGAAGTGATCAGCGAGTACTCCCGCAAAGTGGACTTTCTGA
AGGGCATGCTGCAGGCCGAGAAGTTGACCTCCTCCTCTGAAAAAGCTCTAGCTAACCAGTTCCTGGCTCC
TGGCCGCGTGCCCACCACAGCCAAGGAGCGGGTGCCTGCCACCAAGACTGTACATTTGCAGTCTAGGGCA
CGTTACACCAGTGAGATGCGGAGTGAGCTGTTGGGCATGGAACCATCTGGAGAATGTGAGGTGGACATGA
GGAAACGAGCTGCGAAGGGGTCCAGACCTGCAGATGAGAGGCAGTCAGCATCCGAGCTAGACCTCGTCCT
CCAGAGGCACCAGGGCCTCCAGGAAAAGCTGGCTGAGGAGATGCTAGGCCTGGCCCGCAGCCTCAAGACC
AACACACTGGCTGCCCAGAGTGTCATCAAGAAGGACAATCAGACCCTGTCACATTCACTCAAGATGGCAG
ACCAGAACCTGGAGAAGCTGAAGCTGGAGTCGGAGAGATTGGAGCAGCATGCACAGAAGTCAGTGAACTG
GCTGCTGTGGGCCATGCTCATTGTCGTGTGCTTCGTGTTCATCAGCATGATCCTGTTTATCCGAATCATG
CCCAGGCTGAAATAA

Translation (284 aa):
MDYRDSASKNEKGQMAQAEGAYHRPLATSRLELNLVRLLCRCESMAAEKREPDEWRLEKYVGALEDMLQA
LKVQASKPASEVISEYSRKVDFLKGMLQAEKLTSSSEKALANQFLAPGRVPTTAKERVPATKTVHLQSRA
RYTSEMRSELLGMEPSGECEVDMRKRAAKGSRPADERQSASELDLVLQRHQGLQEKLAEEMLGLARSLKT
NTLAAQSVIKKDNQTLSHSLKMADQNLEKLKLESERLEQHAQKSVNWLLWAMLIVVCFVFISMILFIRIM
PRLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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