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Report for CCDS40092.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40092.1 Public Mus musculus 7 Bmal1 23 108 98 CCDS HistoryNCBI Gene:11865Re-query CCDS DB by CCDS ID:40092.1Re-query CCDS DB by GeneID:11865See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40092.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047321.8 ENSMUSP00000046235.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047321.8Link to Ensembl Protein Viewer:ENSMUSP00000046235.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047321Re-query CCDS DB by Protein ID:ENSMUSP00000046235
Original member Current member EBI ENSMUST00000210238.1 ENSMUSP00000147989.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210238.1Link to Ensembl Protein Viewer:ENSMUSP00000147989.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210238Re-query CCDS DB by Protein ID:ENSMUSP00000147989
Original member NCBI NM_007489.4 NP_031515.1 Updated not alive Link to Nucleotide Sequence:NM_007489.4Link to Protein Sequence:NP_031515.1Re-query CCDS DB by Nucleotide ID:NM_007489Re-query CCDS DB by Protein ID:NP_031515
Current member NCBI NM_007489.5 NP_031515.1 Accepted alive Link to Nucleotide Sequence:NM_007489.5Link to Protein Sequence:NP_031515.1Re-query CCDS DB by Nucleotide ID:NM_007489Re-query CCDS DB by Protein ID:NP_031515Link to BLAST:NP_031515.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031515.1 626 Q9WTL8-4 626 100% 0 0

Chromosomal Locations for CCDS 40092.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 113280663 113280802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113283257 113283295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113283521 113283562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113284999 113285156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113287117 113287196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113291461 113291553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113293178 113293295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113295444 113295593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113299187 113299433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113301551 113301657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113303341 113303491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113304324 113304412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113306018 113306126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113308616 113308709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113312794 113312896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113313459 113313619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1881 nt):
ATGGCGGACCAGAGAATGGACATTTCCTCAACCATCAGCGACTTCATGTCTCCGGGCCCCACCGACCTAC
TCTCCGGTTCCCTGGGCACCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGGCAGTGCCACTGACTACCA
AGAAAGTATGGACACAGACAAAGATGACCCTCATGGAAGGTTAGAATATGCAGAACACCAAGGAAGGATC
AAGAATGCAAGGGAGGCCCACAGTCAGATTGAAAAGAGGCGTCGGGACAAAATGAACAGTTTCATTGATG
AATTGGCTTCTTTGGTACCAACATGCAATGCAATGTCCAGGAAGTTAGATAAACTCACCGTGCTAAGGAT
GGCTGTTCAGCACATGAAAACTTTGAGAGGTGCCACCAACCCATACACAGAAGCAAACTACAAGCCAACA
TTTCTATCAGATGACGAACTGAAACACCTAATTCTCAGGGCAGCAGATGGATTTTTGTTTGTCGTAGGAT
GTGACCGAGGGAAGATCCTCTTTGTCTCCGAGTCTGTCTTCAAGATCCTCAATTATAGCCAGAATGACCT
TATTGGCCAGAGCTTGTTTGACTACCTGCATCCAAAAGATATTGCCAAAGTTAAGGAACAGCTATCTTCC
TCGGACACTGCGCCCCGGGAGCGACTCATTGATGCCAAGACTGGACTTCCGGTTAAAACGGATATAACCC
CTGGGCCCTCCCGGCTATGCTCTGGAGCCCGCCGCTCTTTCTTCTGTAGAATGAAGTGCAACAGGCCTTC
AGTAAAGGTGGAAGATAAGGACTTCGCCTCTACCTGTTCAAAGAAAAAAGCAGATCGAAAAAGCTTCTGC
ACAATCCACAGCACAGGCTATTTGAAAAGCTGGCCACCCACGAAGATGGGGCTGGACGAAGACAATGAGC
CAGACAACGAGGGCTGCAACCTCAGCTGCCTCGTTGCAATCGGGCGCCTGCACTCGCACATGGTTCCACA
ACCAGCGAACGGGGAAATACGGGTGAAATCTATGGAGTACGTTTCTCGACACGCAATAGATGGGAAATTT
GTTTTTGTAGATCAGAGGGCGACAGCTATTTTGGCGTATCTACCACAGGAACTTCTAGGTACATCATGTT
ATGAGTATTTTCATCAAGACGACATAGGACACCTCGCAGAATGTCACAGGCAAGTTTTACAGACAAGAGA
AAAGATCACAACTAATTGCTATAAGTTTAAGATCAAAGATGGTTCTTTTATCACGCTACGAAGTCGATGG
TTCAGTTTCATGAACCCGTGGACCAAGGAAGTTGAATACATTGTCTCAACCAACACTGTTGTTTTAGCCA
ATGTCCTGGAAGGCGGGGACCCAACCTTCCCGCAGCTAACAGCACCCCCCCACAGCATGGACAGCATGCT
GCCCTCTGGAGAAGGTGGCCCAAAGAGGACTCATCCCACTGTCCCAGGCATTCCAGGGGGAACCAGAGCC
GGAGCAGGAAAAATAGGTCGAATGATCGCGGAGGAAATCATGGAAATCCACAGGATAAGAGGGTCATCGC
CTTCCAGCTGTGGCTCCAGCCCGCTGAACATCACAAGTACGCCTCCCCCTGATGCCTCTTCTCCAGGAGG
CAAGAAGATTCTAAATGGAGGGACTCCAGACATTCCTTCCACTGGACTATTACCAGGGCAGGCTCAGGAG
ACCCCAGGGTATCCCTATTCTGATAGTTCTTCTATTCTTGGTGAGAACCCCCACATAGGCATCGATATGA
TAGATAACGACCAAGGATCAAGTAGTCCCAGTAACGATGAGGCAGCAATGGCTGTCATCATGAGCCTCTT
GGAAGCAGATGCGGGGCTGGGTGGCCCCGTTGACTTTAGTGACTTGCCATGGCCGCTGTAG

Translation (626 aa):
MADQRMDISSTISDFMSPGPTDLLSGSLGTSGVDCNRKRKGSATDYQESMDTDKDDPHGRLEYAEHQGRI
KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPYTEANYKPT
FLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQLSS
SDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFASTCSKKKADRKSFC
TIHSTGYLKSWPPTKMGLDEDNEPDNEGCNLSCLVAIGRLHSHMVPQPANGEIRVKSMEYVSRHAIDGKF
VFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRSRW
FSFMNPWTKEVEYIVSTNTVVLANVLEGGDPTFPQLTAPPHSMDSMLPSGEGGPKRTHPTVPGIPGGTRA
GAGKIGRMIAEEIMEIHRIRGSSPSSCGSSPLNITSTPPPDASSPGGKKILNGGTPDIPSTGLLPGQAQE
TPGYPYSDSSSILGENPHIGIDMIDNDQGSSSPSNDEAAMAVIMSLLEADAGLGGPVDFSDLPWPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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