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Report for CCDS39920.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39920.1 Public Mus musculus 7 AI987944 23 108 98 CCDS HistoryNCBI Gene:233168Re-query CCDS DB by CCDS ID:39920.1Re-query CCDS DB by GeneID:233168See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39920.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071804.9 ENSMUSP00000071708.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071804.9Link to Ensembl Protein Viewer:ENSMUSP00000071708.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000071804Re-query CCDS DB by Protein ID:ENSMUSP00000071708
Original member NCBI NM_183167.4 NP_898990.1 Updated not alive Link to Nucleotide Sequence:NM_183167.4Link to Protein Sequence:NP_898990.1Re-query CCDS DB by Nucleotide ID:NM_183167Re-query CCDS DB by Protein ID:NP_898990
Current member NCBI NM_183167.5 NP_898990.1 Accepted alive Link to Nucleotide Sequence:NM_183167.5Link to Protein Sequence:NP_898990.1Re-query CCDS DB by Nucleotide ID:NM_183167Re-query CCDS DB by Protein ID:NP_898990Link to BLAST:NP_898990.1

Chromosomal Locations for CCDS 39920.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 41374342 41375374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 41376491 41376548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 41376746 41376872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 41393227 41393229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGAATGGAATGACCTATGATGATGTCCATGTAAACTTCACTGAAGAAGAGTGGGCTTTGCTCAGTCCTT
CCCAGAAGAGGCTCTACAAGGATGTGATGCTGGAAACCTACAAGAACCTCACTGCTATAGGTTACAATTG
GGAAGACCATAATAGTGAACATTTTCAACATTCTAGAAGACATGGAAGGCATGAAAGAAGTCATACTGGA
GAAAAACCTTCTGTATATACTCAGTGTGGTAAAGTCTTTGCATATCGCAGTCATCCTCAGAATCATGATA
GAATGCATACAGGAGAGAAAAGCCATGAAGGTATTCAACATGGTAAAGCCTTTGCACATCAAAGTCACCT
TCAAAGGCATGAAAGAATTCATACCAGCAAGAAACCTTATGAATGTAATCAGTGTGGTAAGGCCTTTGCA
CATCGTAGTTACCTTCGAAAGCATAAAAGAATTCATATTGAAGAGAAGCCCGATGAATGGAACCAATGTG
GTCAAGGTAATCTCCAAATACATAAAAGGACACATTCTGCACAGAAACCCTATGAATGTAATCAGTGTGG
AAAAGCCTTCAGGCGGCACAATAGTCTCCAAGTACATAATAGAACACATACTGGAGAGAAACCCTACAAA
TGTGATCAATGTGATAAAGCCTTTACACAACAAGGTCATCTCCGAATTCATAATAGAACACATACTGGAG
AGAAACCCTATGAATGCAATCAATGTGGTAAAGCCTTTGCAGTTCACAGTACTCTCCAAATACATAAAAG
GACACATACTGCAGAGACACCCTATGAATGTAATCAGTGTGGTAAAGCCTTTAGGCGGCACAATACCCTC
CAAATACATAAAAGAACACACACTGGAGAAAAACCATACAAATGCGATCAATGTGATAAAGCCTTTTCAC
AACAAGGTCACCTCAGAATACATAAAAGAACACATACTGGAGAGAAACCTTATAAATGTAGTCAGTGTGG
TAAAGCTTTTGCACGCCATAGTCATCTTCTAATTCATGAAAGAATTCATACTGGAGAGAAACCTTACAGA
TGTAATCAATGTAATAAAGCCTTTTCACAATATGGTGGTCTTCAAATACATAAAAGCACACATACTGCTG
AGAAGCCCTATGAATGTAATGAATGTGGTAAAACTTTTTCACAACACAGTTATCTCCGAACACATAAAAG
AACACATACTAGAGAGAAACCCTATAAATAA

Translation (406 aa):
MNGMTYDDVHVNFTEEEWALLSPSQKRLYKDVMLETYKNLTAIGYNWEDHNSEHFQHSRRHGRHERSHTG
EKPSVYTQCGKVFAYRSHPQNHDRMHTGEKSHEGIQHGKAFAHQSHLQRHERIHTSKKPYECNQCGKAFA
HRSYLRKHKRIHIEEKPDEWNQCGQGNLQIHKRTHSAQKPYECNQCGKAFRRHNSLQVHNRTHTGEKPYK
CDQCDKAFTQQGHLRIHNRTHTGEKPYECNQCGKAFAVHSTLQIHKRTHTAETPYECNQCGKAFRRHNTL
QIHKRTHTGEKPYKCDQCDKAFSQQGHLRIHKRTHTGEKPYKCSQCGKAFARHSHLLIHERIHTGEKPYR
CNQCNKAFSQYGGLQIHKSTHTAEKPYECNECGKTFSQHSYLRTHKRTHTREKPYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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