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Report for CCDS52202.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52202.1 Public Mus musculus 7 Lrp3 23 108 98 CCDS HistoryNCBI Gene:435965Re-query CCDS DB by CCDS ID:52202.1Re-query CCDS DB by GeneID:435965See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52202.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122409.7 ENSMUSP00000114026.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122409.7Link to Ensembl Protein Viewer:ENSMUSP00000114026.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122409Re-query CCDS DB by Protein ID:ENSMUSP00000114026
Original member Current member NCBI NM_001024707.2 NP_001019878.1 Accepted alive Link to Nucleotide Sequence:NM_001024707.2Link to Protein Sequence:NP_001019878.1Re-query CCDS DB by Nucleotide ID:NM_001024707Re-query CCDS DB by Protein ID:NP_001019878Link to BLAST:NP_001019878.1

Chromosomal Locations for CCDS 52202.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 35202082 35202669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35202929 35203061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35203268 35204381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35204681 35204895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35206037 35206175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35211435 35211497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35213140 35213187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35214856 35214928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2373 nt):
ATGGAGAAGCGCGCGGCCGCGGGGCCGGAGGGGGCGCCGGGCGCCAGGGCGCCGCTCGCAGTCGTCTGCC
TGGTGAACCTCTTTCTCACTGGGAGGCTCAGCAGTGCAGTTCCCGCCTTAGGCAAAGCAGGAGCTACGTG
GGGTTTCGGGTTTCAGGCTGCCACTGAGCCCACTGGGACTCAAGCCGCCTGCAGTGGGAAGTTGGAACAG
CACACTGAACGTCGAGGGGTTATCTACAGCCCAGCCTGGCCCCTCAACTACCCTCCAGGCACCAACTGCA
GCTGGTACATTCAAGGAGACCGTGGTGACATGATCACTATCAGTTTCCGAAACTTCGATGTAGAGGAGTC
TCACCAGTGTTCCCTCGACTGGCTCCTGTTGGGCCCAGCAGCTCCTCCTCGCCAGGAGGCCTTCCGCCTC
TGCGGCTCAGCCATCCCACCCGCCTTCATCTCTGCCCGTGACCACGTCTGGATCTTCTTCCACTCAGACG
CCTCCAGCTCTGGCCAGGCCCAGGGCTTCCGCCTCTCCTATATCCGAGGGAAGCTGGGCCAGACATCCTG
CCAGACAGATGAGTTCCGCTGTGACAACGGTAAATGCCTGCCTGGTCCTTGGCAGTGCAACATGGTGGAT
GAGTGTGGAGACGGCTCGGATGAGGGTAACTGCTCAGCACCTGCCTCAGAGCCACCAGGCAGCCTGTGCC
CCGGGGGCACCTTCCCCTGCAGCGGAGCCCGCTCCACACGCTGCCTGCCTGTGGAGCGGCGCTGCGACGG
CACTCAGGACTGCGGTGACGGCTCTGATGAGGCTGGCTGCCCCGACCTAGCATGTGGCCGGCGGCTGGGC
AGCTTTTACGGTTCCTTCGCCTCCCCAGACTTGTTTGGCGCCGCCCGTGGGCCTTCGGACCTTCACTGCA
CGTGGCTGGTGGACACGCAGGACCCGAGGCGCGTGCTGCTGCAGCTGGAGCTACGACTGGGTTATGATGA
CTATGTCCAGGTGTATGAAGGCCTGGGCGAGCGTGGGGACCGTCTGCTGCAAACGCTTTCCTACCGCAGC
AACCACCGGCCCGTGAGCCTGGAAGCAGCTCAGGGCCGCCTCACTGTGGCCTACCATGCTCGTGCTCGCA
GTGCTGGTCACGGCTTCAACGCCACATACCAGGTGAAGGGCTACTGCCTCCCGTGGGAGCAACCATGTGG
GAGCAGCGAGGGAGATGACGACAGCACAGGGGAACAGGGGTGCTTCTCAGAGCCACAACGCTGTGATGGC
TGGTGGCATTGTGCAAGCGGCCGAGATGAGCAGGGCTGTCCAGCGTGCCCTCCGGACCAGTATCCCTGTG
AGGGTGGTAGTGGCCTGTGCTATGCACCTGCCGATCGTTGCAACAACCAGAAAAGCTGCCCCGATGGCGC
CGATGAGAAGAACTGCTTTTCCTGCCAGCCGGGCACCTTCCACTGTGGTACGAACCTGTGCATCTTTGAG
ACGTGGCGCTGTGACGGTCAGGAGGACTGCCAAGATGGCAGCGATGAGCATGGCTGCCTGGCTGCCGTGC
CCCGCAAGGTCATCACCGCCGCCCTCATTGGCAGCCTAGTATGCGGACTGCTGCTTGTTATTGCCCTAGG
CTGTGCCTTCAAACTCTACTCCCTGCGCACGCAGGAGTACAGGGCCTTTGAGACCCAAATGACACGCTTA
GAGGCAGAGTTTGTGCGGCGCGAAGCCCCCCCATCCTACGGTCAGCTCATCGCACAGGGCCTCATCCCAC
CGGTTGAGGATTTTCCTGTCTACAGTGCATCCCAGGCTTCAGTGCTACAGAACCTTCGCACAGCCATGCG
ACGACAGATGCGTCGGCATGCCTCCCGCAGGGGGCCATCTCGTCGAAGACTGGGCCGCCTCTGGAACAGG
CTCTTCCACCGGCCACGGGCACCTCGAGGCCAGATCCCACTGCTGACCGCCGCTCGTACCTCACAGACCG
TGCTGGGTGATGGGCTCCTCCAGGCAGCACCGGGGCCTGTCCCAGAGCCCCCAGCACCCAATACAGACAC
AGGCAGCCCTAGGGAGGCTGGAGATGGGCCTCCTAGTGGCTCTGGCCATGCACCAGAAGTGGGGCCTTCA
GTGCCACCCCCACCCTTAAATCTGCGAGACCCAGAGTACAGGCCAGAGGACAAGGAGAGAAAGGCCTGTG
TGGAACCTCTGGAAGACAGCCCAGCCCCTGTGGACACGCCTCCAGAGCCCTGCTTGGCACAAGACCCCCA
CCCTCAGACTCCCACTGCCAGTGGCACCCAAGACCCCCACTCAGCAGAGCCACTGGGGGTCTGCAGGAGC
CCTCCACCACCCTGCTCCCCAATATTGGAGGCTAGTGATGATGAGGCCCTTCTGGTCTGCTGA

Translation (790 aa):
MEKRAAAGPEGAPGARAPLAVVCLVNLFLTGRLSSAVPALGKAGATWGFGFQAATEPTGTQAACSGKLEQ
HTERRGVIYSPAWPLNYPPGTNCSWYIQGDRGDMITISFRNFDVEESHQCSLDWLLLGPAAPPRQEAFRL
CGSAIPPAFISARDHVWIFFHSDASSSGQAQGFRLSYIRGKLGQTSCQTDEFRCDNGKCLPGPWQCNMVD
ECGDGSDEGNCSAPASEPPGSLCPGGTFPCSGARSTRCLPVERRCDGTQDCGDGSDEAGCPDLACGRRLG
SFYGSFASPDLFGAARGPSDLHCTWLVDTQDPRRVLLQLELRLGYDDYVQVYEGLGERGDRLLQTLSYRS
NHRPVSLEAAQGRLTVAYHARARSAGHGFNATYQVKGYCLPWEQPCGSSEGDDDSTGEQGCFSEPQRCDG
WWHCASGRDEQGCPACPPDQYPCEGGSGLCYAPADRCNNQKSCPDGADEKNCFSCQPGTFHCGTNLCIFE
TWRCDGQEDCQDGSDEHGCLAAVPRKVITAALIGSLVCGLLLVIALGCAFKLYSLRTQEYRAFETQMTRL
EAEFVRREAPPSYGQLIAQGLIPPVEDFPVYSASQASVLQNLRTAMRRQMRRHASRRGPSRRRLGRLWNR
LFHRPRAPRGQIPLLTAARTSQTVLGDGLLQAAPGPVPEPPAPNTDTGSPREAGDGPPSGSGHAPEVGPS
VPPPPLNLRDPEYRPEDKERKACVEPLEDSPAPVDTPPEPCLAQDPHPQTPTASGTQDPHSAEPLGVCRS
PPPPCSPILEASDDEALLVC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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