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Report for CCDS20899.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20899.1 Public Mus musculus 7 Ppp1r13l 23 108 98 CCDS HistoryNCBI Gene:333654Re-query CCDS DB by CCDS ID:20899.1Re-query CCDS DB by GeneID:333654See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20899.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047621.13 ENSMUSP00000047839.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047621.13Link to Ensembl Protein Viewer:ENSMUSP00000047839.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047621Re-query CCDS DB by Protein ID:ENSMUSP00000047839
Original member NCBI NM_001010836.3 NP_001010836.1 Updated not alive Link to Nucleotide Sequence:NM_001010836.3Link to Protein Sequence:NP_001010836.1Re-query CCDS DB by Nucleotide ID:NM_001010836Re-query CCDS DB by Protein ID:NP_001010836
Current member NCBI NM_001010836.4 NP_001010836.1 Accepted alive Link to Nucleotide Sequence:NM_001010836.4Link to Protein Sequence:NP_001010836.1Re-query CCDS DB by Nucleotide ID:NM_001010836Re-query CCDS DB by Protein ID:NP_001010836Link to BLAST:NP_001010836.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010836.1 824 Q5I1X5 824 100% 0 0

Chromosomal Locations for CCDS 20899.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19368568 19368622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19368717 19368859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19369794 19370304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19370389 19370487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19370566 19370657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19371205 19371646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19372924 19373384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19375250 19375381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19375485 19375618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19375725 19375891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19377488 19377687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19377967 19378005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2475 nt):
ATGGACAGCGAAGCATTCCAGCATGCGAGGGACCTTCTGGACCTGAACTTCCAGTCACTGGCCATGAAGC
ACATGGATCTGAAACAGATGGAGCTGGACACCGCTGCCGCCAAAGTGGACGAATTAACCAAGCAGTTAGA
GTCGTTGTGGTCAGACTCGCCAGCTCCTCCTGGCGCTCAGGCTGGAGTCCCCTCTAGGATGGCCCGGTAC
AGCACCAGCCCGGTCCCCGAGCATTTTGGCAGCAGAGGGTCACCTCAGAAGATAGCCACCGATGGCATAG
AGGCCCGTTTTGGACGCTCGGAGAGTGCCCCGTCCCTGCACCCTTACAGCCCTCTGTCTCCCAAGGGCCG
TCCGTCTTCACCGCGCACCCCTATCTACCTGCAGCCTGACACCTACAGCAGCCTAGATCGGGCGCCATCG
CCCAGACCCCGCGCCTTCGATGGAGCGGGCAGCCCCCATGGTCGGGCACCGTCCCCGAGGCCGGGGATTG
GCCCGGTGCGGCAGCCTGGTCCCTCGACCCCCTTTGACTATCTGGGCCGCGCAGGGTCCCCCCGGGGCAG
CCCTCTAGCTGAGGGGCCCCAGGCCTTCTTCCCGGAGCGAGGACCTTCCCCACGTCCGCCTGCTGCAGCC
TACGACACAGCGGGCACGTTCGGGAGCCCTCTGCTGGGCGCGGGTGGCAGTGCCTTCACCCCGCCGCTTC
GTGCACAAGATGACTCGACGCTGCGCCGGAGGCCCCCGAAGGCCTGGAACGAGTCTGACTTGGATGTAGC
CTACGAGAAAAAGTCTTCACAGACAGCAAGCTACGAACGGCTGGATGTCTTCACACGGCCTGCCTCTCCG
GGCCTGCAGCTCTTACCCTGGAGAGAGAGCAGCCTGGATGGGCTGGGGGCCAGTGGCAAGGACCACCTCA
CCAGCGCCACTCTGCCACGCAATTACAAGGTGTCTCCTCTGGCCAGTGACAGGCGTTCTGACGTTGGCAG
CTACCGCCGCTCTTTGGGCTCTGCAGGGCCCTCAGGCACTTTGCCCCGCAGCTGGCAGCCCGTCAGCCGC
ATCCCCATGCCCCCCTCTAGCCCACAGCCCCGCAGCACCCCACGCCAGCGCCCCATCCCCCTCAGTATGA
TCTTTAAACTCCAGAATGCTTTCTGGGAACATGGAGCCGGCAGGGCTGTGCTCCCGGGATCCCCCATCTT
CTCCCGAGCACCCCCACCTAAGCTGCCTCCCCAGCCACCCCCTCAGCCACAGATGCAACCCCAACCCCAA
CCCCAACCTCAGATGCAGCCCCAGTCCCAGGCCCAGCCTCAGACTCCAGCACCTCAACAGACTTGGTCTC
CCATGAATGAAGGCCTCCTCAAATCCCCTGCCGAGCTGGAGCCCGAGCCCGAGCTGGAGGTGCTACTGGC
TCCTGTGGAGGAGGCCGGGGATGCAGATGAAGGCACGGTCACGCGGCCCCTCAGCCCTACCAGGCTGCAG
CCAGCGCTGCCACCGGAAGCACAGACTGTACCCGAGCTGGAGGAGGTGGCCCGAGTGCTGGCAGAGATTC
CTCGACCCCTCAAACGCAGAGGCTCCATGGAGCAGAGCCCTGCAGTGGCGCTGCCTCCCACCCACAAGAA
ACAATACCAACAGATCATCAATAGACTCTTCCATCGGCACGGCGGCCCAGGGCCTGGAGGGCCTGAGCCG
GAGCTGTCCACAATTACAGAGGGATCTGAAGCCAGGGCAGGGCCCCCTGCTCCCGCCCCACCAGCTCCTA
TCCCACCCCCAGCCCCACCCCAGAGCAGCCCTCCAGAGCAGCCTCAGAGCATGGAGATGCGCTCAGTACT
GCGCAAAGTGGGGTCCCCGCGCAAGGCCCGGCGTGCTCGCCTCAATCCACTGGTGCTGCTGTTGGATGCA
GCGCTGACTGGAGAGTTGGACGTGGTACAGCAGGCGGTGAAGGAGATGAACGACCCAAGCCAGCCCAACG
AGGAGGGCATCACCGCCCTGCACAATGCCATCTGCGGTGCCAACTACCCCATCGTGGACTTCCTCATCGC
TGCGGGCGCCAACGTCAACTCCCCTGACAGCCACGGCTGGACGCCACTGCATTGTGCCGCTTCCTGCAAT
GACACTGCCATCTGCACAGCATTGGTGCAACATGGTGCGGCCATCTTCGCCACCACTCTCAGTGACGGCG
CCACCGCCATCGAAAAGTGCGACCCTTACCGCGAGGGCTATGCAGACTGTGCCACCTACCTGGCAGACGT
GGAACAAAGCATGGGACTGATGCACAATGGCGTTGTGTATGCACTCTGGGACTACAGCGCAGAGTTTGGG
GATGAGCTGTCTTTCCGAGAGGGCGAGTCAGTCACTGTGCTGCGGAGAGATGGGCCAGAGGAGACTGATT
GGTGGTGGGCCTCACTGCACGGCCAGGAAGGCTATGTGCCGCGCAACTACTTCGGGCTCTTCCCTAGAGT
GAAGTCTCAGCGGAGCAAAATCTAG

Translation (824 aa):
MDSEAFQHARDLLDLNFQSLAMKHMDLKQMELDTAAAKVDELTKQLESLWSDSPAPPGAQAGVPSRMARY
STSPVPEHFGSRGSPQKIATDGIEARFGRSESAPSLHPYSPLSPKGRPSSPRTPIYLQPDTYSSLDRAPS
PRPRAFDGAGSPHGRAPSPRPGIGPVRQPGPSTPFDYLGRAGSPRGSPLAEGPQAFFPERGPSPRPPAAA
YDTAGTFGSPLLGAGGSAFTPPLRAQDDSTLRRRPPKAWNESDLDVAYEKKSSQTASYERLDVFTRPASP
GLQLLPWRESSLDGLGASGKDHLTSATLPRNYKVSPLASDRRSDVGSYRRSLGSAGPSGTLPRSWQPVSR
IPMPPSSPQPRSTPRQRPIPLSMIFKLQNAFWEHGAGRAVLPGSPIFSRAPPPKLPPQPPPQPQMQPQPQ
PQPQMQPQSQAQPQTPAPQQTWSPMNEGLLKSPAELEPEPELEVLLAPVEEAGDADEGTVTRPLSPTRLQ
PALPPEAQTVPELEEVARVLAEIPRPLKRRGSMEQSPAVALPPTHKKQYQQIINRLFHRHGGPGPGGPEP
ELSTITEGSEARAGPPAPAPPAPIPPPAPPQSSPPEQPQSMEMRSVLRKVGSPRKARRARLNPLVLLLDA
ALTGELDVVQQAVKEMNDPSQPNEEGITALHNAICGANYPIVDFLIAAGANVNSPDSHGWTPLHCAASCN
DTAICTALVQHGAAIFATTLSDGATAIEKCDPYREGYADCATYLADVEQSMGLMHNGVVYALWDYSAEFG
DELSFREGESVTVLRRDGPEETDWWWASLHGQEGYVPRNYFGLFPRVKSQRSKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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