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Report for CCDS85183.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85183.1 Public Mus musculus 6 Sox5 23 108 98 CCDS HistoryNCBI Gene:20678Re-query CCDS DB by CCDS ID:85183.1Re-query CCDS DB by GeneID:20678See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85183.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111748.7 ENSMUSP00000107377.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111748.7Link to Ensembl Protein Viewer:ENSMUSP00000107377.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111748Re-query CCDS DB by Protein ID:ENSMUSP00000107377
Original member Current member NCBI NM_001347506.1 NP_001334435.1 Accepted alive Link to Nucleotide Sequence:NM_001347506.1Link to Protein Sequence:NP_001334435.1Re-query CCDS DB by Nucleotide ID:NM_001347506Re-query CCDS DB by Protein ID:NP_001334435Link to BLAST:NP_001334435.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334435.1 392 P35710-3 392 100% 0 0

Chromosomal Locations for CCDS 85183.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 143833264 143833567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143835196 143835412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143841174 143841347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143844736 143844844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143861384 143861529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143873973 143874150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143941351 143941401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGGCAGCTGCTGCTGCAGCAACACCAGGCTTAGGCCCACTCCAGCTGCAGGATGAAGTGGCCCAGCCAC
TGAACCTATCAGCTAAGCCCAAGACCTCTGATGGCAAATCACCTGCATCACCCACCTCTCCTCACATGCC
AGCTCTGAGAATAAACAGTGGGGCTGGCCCCCTCAAAGCCTCTGTCCCGGCAGCATTAGCTAGTCCTTCT
GCAAGAGTTAGCACAATAGGCTATTTAAATGACCACGATGCTGTCACCAAGGCAATCCAAGAAGCTCGCC
AGATGAAAGAGCAACTCAGGCGAGAGCAGCAAGCGTTGGACGGGAAGGTGGCCGTGGTGAACAGCATAGG
TCTCAGCAACTGCCGGACAGAAAAGGAAAAAACAACACTGGAGAGCCTGACTCAGCAGTTGGCAGTTAAA
CAGAATGAAGAAGGGAAATTTAGCCATGGAATGATGGATTTCAATATGAGTGGAGATTCTGACGGAAGCG
CTGGAGTCTCAGAGTCAAGAATTTACAGGGAATCCAGGGGACGTGGTAGCAACGAGCCCCACATAAAGCG
TCCAATGAATGCCTTCATGGTGTGGGCGAAAGATGAACGGAGGAAAATCCTTCAGGCCTTTCCCGACATG
CACAATTCCAACATCAGCAAGATACTGGGATCTCGCTGGAAAGCTATGACCAACCTAGAGAAACAGCCAT
ACTATGAGGAGCAGGCCCGCCTCAGCAAACAGCACCTGGAGAAGTACCCGGACTACAAGTACAAGCCTAG
GCCAAAGCGCACCTGTCTGGTGGACGGCAAGAAACTGCGTATCGGGGAGTACAAGGCCATCATGCGGAAC
CGGAGGCAGGAAATGCGACAGTACTTCAACGTTGGGCAACAAGCACAGATCCCCATCGCGACGGCCGGAG
TTGTATACCCCAGCGCCATCGCCATGGCAGGAATGCCGTCCCCTCACCTGCCCTCCGAGCACTCGAGCGT
GTCCAGCAGCCCGGAGCCCGGGATGCCCGTGATCCAGAGCACTTACGGCGCCAAGGGAGAGGAGCCCCAC
ATCAAGGAAGAGATCCAGGCTGAGGACATCAACGGAGAGATTTACGAGGAGTACGATGAGGAGGAGGAGG
ACCCGGATGTGGATTATGGGAGTGACAGCGAAAACCACATTGCGGGACAAGCCAACTGA

Translation (392 aa):
MAAAAAATPGLGPLQLQDEVAQPLNLSAKPKTSDGKSPASPTSPHMPALRINSGAGPLKASVPAALASPS
ARVSTIGYLNDHDAVTKAIQEARQMKEQLRREQQALDGKVAVVNSIGLSNCRTEKEKTTLESLTQQLAVK
QNEEGKFSHGMMDFNMSGDSDGSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDM
HNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRN
RRQEMRQYFNVGQQAQIPIATAGVVYPSAIAMAGMPSPHLPSEHSSVSSSPEPGMPVIQSTYGAKGEEPH
IKEEIQAEDINGEIYEEYDEEEEDPDVDYGSDSENHIAGQAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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