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Report for CCDS39685.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39685.1 Public Mus musculus 6 BC049715 23 108 98 CCDS HistoryNCBI Gene:320135Re-query CCDS DB by CCDS ID:39685.1Re-query CCDS DB by GeneID:320135See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39685.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052702.6 ENSMUSP00000049512.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052702.6Link to Ensembl Protein Viewer:ENSMUSP00000049512.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000052702Re-query CCDS DB by Protein ID:ENSMUSP00000049512
Original member Current member EBI ENSMUST00000163640.1 ENSMUSP00000133266.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163640.1Link to Ensembl Protein Viewer:ENSMUSP00000133266.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163640Re-query CCDS DB by Protein ID:ENSMUSP00000133266
Original member Current member EBI ENSMUST00000203499.1 ENSMUSP00000145015.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203499.1Link to Ensembl Protein Viewer:ENSMUSP00000145015.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203499Re-query CCDS DB by Protein ID:ENSMUSP00000145015
Original member Current member NCBI NM_178776.3 NP_848891.2 Accepted alive Link to Nucleotide Sequence:NM_178776.3Link to Protein Sequence:NP_848891.2Re-query CCDS DB by Nucleotide ID:NM_178776Re-query CCDS DB by Protein ID:NP_848891Link to BLAST:NP_848891.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848891.2 247 Q810N5 247 100% 0 0

Chromosomal Locations for CCDS 39685.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 136839764 136840507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGTCTTCTGAGTCAGAAAAGGATAAAGAGAGACTGATCCAAGCTGCCAAACTATTCTTCTTCCACATAC
GAGACCTGGTCTCCTTCATAAATCGGTTCGTTGAGCTGTTTAACCTCACGATGAAGACTCAGATCCTTCC
CATGAATCTGAACGAAGAGAGCTGCATTAAAGATTTCTTTGAACAAATGATCAGAAATTTCAAAGAGATG
CAACTGATGGTGGATGGAAAGCACAAACAAATGCAGAAGGAGCCGTTGTGCTCTAAGGTGCTGACTGCTA
TGACCTCTGCAGTGGAGAAGTGCGCCACCATTGCTCCACACCACACCGCGGAAGATATGCTCAGAAACAT
CCAGACATCAGGTGCTGCCTTGGTCCTGAAGACCAGTCATGTGCTTGTGAATCTAGAAACTTCTCTCTCA
CTCCTGATGCAGTTCCCCATCATGGGTCTTCGATTAAGTGACCTCTATAGAGAGGAGACCAAAGAGCAGT
CAGATGCCACCTCAGATGCCACCACATCTGAGAAAAACAAGAGTCCAGAATGTCCCAAAGCCACTACAGA
GGAAACCTTGAGGAAGCTGCAAGATGTGCTAAGTCCTGAGAATGCCCACACGCCCGTAGAAGCAGCCGCA
GATGAGCTGGAACAGTTTGTCAAGAGTATGGAGATAACGTTACAGGTCCTCCAGAAATCCATCAAGACCA
TGGAAGGGGATATCTTTGTACTTACGCAGGTCCAGGGCAAGTAG

Translation (247 aa):
MSSESEKDKERLIQAAKLFFFHIRDLVSFINRFVELFNLTMKTQILPMNLNEESCIKDFFEQMIRNFKEM
QLMVDGKHKQMQKEPLCSKVLTAMTSAVEKCATIAPHHTAEDMLRNIQTSGAALVLKTSHVLVNLETSLS
LLMQFPIMGLRLSDLYREETKEQSDATSDATTSEKNKSPECPKATTEETLRKLQDVLSPENAHTPVEAAA
DELEQFVKSMEITLQVLQKSIKTMEGDIFVLTQVQGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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