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Report for CCDS20418.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20418.1 Public Mus musculus 6 Cidec 23 108 98 CCDS HistoryNCBI Gene:14311Re-query CCDS DB by CCDS ID:20418.1Re-query CCDS DB by GeneID:14311See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20418.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032416.10 ENSMUSP00000032416.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032416.10Link to Ensembl Protein Viewer:ENSMUSP00000032416.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032416Re-query CCDS DB by Protein ID:ENSMUSP00000032416
Original member Current member EBI ENSMUST00000113089.7 ENSMUSP00000108712.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113089.7Link to Ensembl Protein Viewer:ENSMUSP00000108712.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113089Re-query CCDS DB by Protein ID:ENSMUSP00000108712
Original member Current member NCBI NM_001301295.1 NP_001288224.1 Accepted alive Link to Nucleotide Sequence:NM_001301295.1Link to Protein Sequence:NP_001288224.1Re-query CCDS DB by Nucleotide ID:NM_001301295Re-query CCDS DB by Protein ID:NP_001288224Link to BLAST:NP_001288224.1
Original member Current member NCBI NM_178373.4 NP_848460.1 Accepted alive Link to Nucleotide Sequence:NM_178373.4Link to Protein Sequence:NP_848460.1Re-query CCDS DB by Nucleotide ID:NM_178373Re-query CCDS DB by Protein ID:NP_848460Link to BLAST:NP_848460.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288224.1 239 P56198 239 100% 0 0
NP_848460.1 239 P56198 239 100% 0 0

Chromosomal Locations for CCDS 20418.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113425562 113425724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113428121 113428311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113428395 113428553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113433060 113433213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113434435 113434487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (720 nt):
ATGGACTACGCCATGAAGTCTCTCAGCCTCCTGTACCCCAGGTCGCTGTCCAGGCATGTGGCAGTGAGCA
CGGCAGTGGTGACCCAACAGCTGGTGTCTAAGCCCAGCCGGGAGACCCCGAGGGCCAGGCCCTGTCGTGT
TAGCACCGCAGATCGGAAGGTTCGCAAAGGCATCATGGCTCACAGCTTGGAGGACCTCCTGAACAAGGTC
CAGGACATCTTGAAACTTAAAGACAAGCCCTTCTCCCTGGTGCTGGAGGAAGATGGCACAATCGTGGAGA
CAGAAGAATACTTCCAAGCCCTGGCAAAAGATACCATGTTCATGGTCCTGCTGAAGGGGCAGAAGTGGAA
GCCCCCATCAGAACAGCGCAAGAAGAGAGCCCAGCTAGCCCTTTCCCAGAAGCCAACTAAGAAGATCGAT
GTGGCCCGGGTAACCTTCGACCTGTACAAGCTGAACCCTCAGGACTTTATTGGCTGCCTGAACGTGAAGG
CAACCCTCTATGACACATACTCGCTTTCCTATGACCTGCACTGCTACAAGGCCAAGCGCATCGTGAAGGA
GATGCTCCGCTGGACCCTCTTCAGCATGCAGGCCACCGGTCACATGCTGCTTGGCACCTCCAGCTACATG
CAGCAGTTCCTGGATGCCACCGAGGAAGAACAGCCTGCCAAGGCCAAGCCCTCCTCCCTCCTCCCAGCCT
GTCTGAAGATGCTGCAATGA

Translation (239 aa):
MDYAMKSLSLLYPRSLSRHVAVSTAVVTQQLVSKPSRETPRARPCRVSTADRKVRKGIMAHSLEDLLNKV
QDILKLKDKPFSLVLEEDGTIVETEEYFQALAKDTMFMVLLKGQKWKPPSEQRKKRAQLALSQKPTKKID
VARVTFDLYKLNPQDFIGCLNVKATLYDTYSLSYDLHCYKAKRIVKEMLRWTLFSMQATGHMLLGTSSYM
QQFLDATEEEQPAKAKPSSLLPACLKMLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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