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Report for CCDS20388.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20388.1 Public Mus musculus 6 Prok2 23 108 98 CCDS HistoryNCBI Gene:50501Re-query CCDS DB by CCDS ID:20388.1Re-query CCDS DB by GeneID:50501See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20388.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101120.10 ENSMUSP00000098678.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101120.10Link to Ensembl Protein Viewer:ENSMUSP00000098678.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000101120Re-query CCDS DB by Protein ID:ENSMUSP00000098678
Original member NCBI NM_001037539.2 NP_001032628.1 Updated not alive Link to Nucleotide Sequence:NM_001037539.2Link to Protein Sequence:NP_001032628.1Re-query CCDS DB by Nucleotide ID:NM_001037539Re-query CCDS DB by Protein ID:NP_001032628
Current member NCBI NM_001037539.3 NP_001032628.1 Accepted alive Link to Nucleotide Sequence:NM_001037539.3Link to Protein Sequence:NP_001032628.1Re-query CCDS DB by Nucleotide ID:NM_001037539Re-query CCDS DB by Protein ID:NP_001032628Link to BLAST:NP_001032628.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032628.1 107 Q9QXU7-2 107 100% 0 0

Chromosomal Locations for CCDS 20388.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 99712353 99712457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99722509 99722634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99726228 99726320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (324 nt):
ATGGGGGACCCGCGCTGTGCCCCGCTACTGCTACTTCTGCTGCTACCGCTGCTGTTCACACCGCCCGCCG
GGGATGCCGCGGTCATCACCGGGGCTTGCGACAAGGACTCTCAGTGCGGAGGAGGCATGTGCTGTGCTGT
CAGTATCTGGGTTAAGAGCATAAGGATCTGCACACCTATGGGCCAAGTGGGCGACAGCTGCCACCCCCTG
ACTCGGAAAGTTCCATTTTGGGGGCGGAGGATGCACCACACCTGCCCCTGCCTGCCAGGCTTGGCGTGTT
TAAGGACTTCTTTCAACCGGTTTATTTGCTTGGCCCGGAAATGA

Translation (107 aa):
MGDPRCAPLLLLLLLPLLFTPPAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTPMGQVGDSCHPL
TRKVPFWGRRMHHTCPCLPGLACLRTSFNRFICLARK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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