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Report for CCDS20158.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20158.2 Public Mus musculus 6 Mturn 23 108 98 CCDS HistoryNCBI Gene:68235Re-query CCDS DB by CCDS ID:20158.2Re-query CCDS DB by GeneID:68235See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 20158.1
This CCDS ID has been updated to represent an alternative protein from a different open reading frame, which is more supported by the available protein data and conservation.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 20158.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000190641.6 ENSMUSP00000140586.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190641.6Link to Ensembl Protein Viewer:ENSMUSP00000140586.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190641Re-query CCDS DB by Protein ID:ENSMUSP00000140586
Original member Current member NCBI NM_001289740.1 NP_001276669.1 Accepted alive Link to Nucleotide Sequence:NM_001289740.1Link to Protein Sequence:NP_001276669.1Re-query CCDS DB by Nucleotide ID:NM_001289740Re-query CCDS DB by Protein ID:NP_001276669Link to BLAST:NP_001276669.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276669.1 131 Q8CGA4 131 100% 0 0

Chromosomal Locations for CCDS 20158.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 54681770 54681931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54689006 54689128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54698980 54699090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (396 nt):
ATGGACTTCCAGCAGCTGGCAGATGTCGCGGAGAAGTGGTGTTCCAGCACGCCCTTTGAGCTCATCGCCG
CCGAGGAGACGGAGCGCAGGATGGACTTCTACGCCGACCCGGGCGTCTCCTTCTACGTACTGTGTCCGGA
CAACGGCTGCGGCGACAGCTTTCACGTGTGGAGCGAGAGCGAGGACTGCCTGCCCTTCTTGCAGCTGGCC
CAAGATTACATCTCTTCCTGCGGCAAGAAGACCCTCCATGAAGTCTTGGAAAAAGTCTTCAAATCCTTCA
GACCTTTGCTGGGGCTTCCAGACGCAGATGACGACGCGTTTGAAGAGTACAGTGCGGATGTGGAGGAGGA
GGAGCCAGAGGCGGACCACCCGCAAATGGGGGTCAGTCAGCAGTAA

Translation (131 aa):
MDFQQLADVAEKWCSSTPFELIAAEETERRMDFYADPGVSFYVLCPDNGCGDSFHVWSESEDCLPFLQLA
QDYISSCGKKTLHEVLEKVFKSFRPLLGLPDADDDAFEEYSADVEEEEPEADHPQMGVSQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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