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Report for CCDS80511.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80511.1 Public Mus musculus 6 Tmem209 23 108 98 CCDS HistoryNCBI Gene:72649Re-query CCDS DB by CCDS ID:80511.1Re-query CCDS DB by GeneID:72649See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80511.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115157.7 ENSMUSP00000110810.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115157.7Link to Ensembl Protein Viewer:ENSMUSP00000110810.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115157Re-query CCDS DB by Protein ID:ENSMUSP00000110810
Original member Current member NCBI NM_001311093.1 NP_001298022.1 Accepted alive Link to Nucleotide Sequence:NM_001311093.1Link to Protein Sequence:NP_001298022.1Re-query CCDS DB by Nucleotide ID:NM_001311093Re-query CCDS DB by Protein ID:NP_001298022Link to BLAST:NP_001298022.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001298022.1 560 Q8BRG8-2 560 100% 0 0

Chromosomal Locations for CCDS 80511.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30482931 30482985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30487375 30487448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30489293 30489390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30489476 30489590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30491087 30491184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30492597 30492722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30494738 30494834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30497167 30497238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30497818 30497993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30501901 30502102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30505733 30505974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30506786 30506917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30508454 30508512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30508666 30508802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1683 nt):
ATGCAAGGAGACGTAAGCCCCAATCCTTCCCTTATTGACAGAACCATCAAGATGAGAAAAGAAACAGAAA
CTAGGAAAGTGGTTTTAGCTTGGGGACTCCTAAATGTATCCATGGCTGGAATGATATATACTGAAATGAC
TGGAAAGTTAATCAGTACATATTATAATGTGACATACTGGCCCCTCTGGTATATCGAACTCGCACTTGCA
TCGCTCTTCAGTCTTAATGCCTTGTTTGATTTTTGGAGATACTTCAAATATACCGTAGCACCAACAAGTC
TGGTAGTTAGCCCCGGACAGCAAGCACTGTTAGGGTTGAAACAGGCTGTTGTGCAGACTACACCTCCCCG
TGATTTGGCAGCAACCCAAATCTCTCCATCTCCACCTTCCCCTTCGATTCAAGGTCAAAGTGTGTTAAGT
TATAGCCCATCTCGTTCACCCAGTACCAGTCCCAAGTTTGCCACCAGCTGTATGACTGGGTATAGCCCTC
AACTGCAAGGCCTGTCGTCAGGAGGCCTTGGCTCTTACAGCCCTGGTGTGACTTACTCGCCTGTCAGTGG
CTACAATAAGTTGGCCAGCTTTAGTCTGTCTCCTTCTTCTCCATACCCTACCACTGTGGGCCCAGTGGAG
AGCAGTGGATTGAGAGCTCGCTACCGTTCTCCACCCACGGTCTACAACTCACCCACTGACAAAGAGGACT
ACATGACAGACCTGAGAACTTTGGACACGTTCCTTAGAAGTGAGGAAGAGAAACAGCATAGAGTGAAGCT
GGGGAGCCCAGATTCCACCTCTCCTTCTACCAGCCCTACCTTCTGGAATTACAGTCGTTCTGTGGGTGAT
TATGCACAAACCTTAAAGAAGTTTCAGTATCAGCTTGCCTGTAGATCACAGGCCCCATGTGCTAACAAAG
ATGAAGCCGATCTCATTTCTAAGCAAGCTGCAGAAGAGGTCTGGGCAAGAGTGACTATGAATAGACAGCT
TCTCGATCACATGGATTCATGGACAGCCAAGTTTAGAAATTGGATCAGTGAGACAATATTGGTGCCGCTT
GTGCAAGAGATTGAGTCTGTCAGCACCCAGATGAGAAGGATGGGCTGTCCAGAGCTACAAATAGGAGAGG
CGAGTGTTACCAGCTTGAAGCAAGCTGCCCTGGTCAGAGCTCCTCTCATTCCAACTCTGAATGCAATTGT
GCAGTATTTAGACCTCACACCAAATCAGGAGTACTTGTTTGAAAGAATCAAAGAACTTTCTCAGGGGGGC
TGTATGAGTTCATTCAGATGGAACAGAGGTGGAGACTTCAAAGGACGCAAATGGGATACAGACCTGCCCA
CTGATTCTGCTATCATCATGCATGTGTTTTGCACCTACCTTGATTCCAGATTACCTCCACACCCTAAGTA
CCCTGATGGAAAAACATTCACTTCTCAGCACTTCGTTCAGACGCCAAATAAACCAGATGTTACGAATGAA
AATGTGTTTTGTATTTATCAGAGTGCTGTCAACCCTCCACATTATGAGCTAATCTATCAGCGGCATGTCT
ACAATCTTCCAAAGGGCAGGAATAATATGTTTCATACGTTGCTGATGTTCCTTTATATCATAAAGACCAA
AGAGTCAGGAATGCTTGGGAGAGTTAACCTTGGGCTCTCTGGCGTGAACATTTTGTGGATCTTTGGAGAG
TAG

Translation (560 aa):
MQGDVSPNPSLIDRTIKMRKETETRKVVLAWGLLNVSMAGMIYTEMTGKLISTYYNVTYWPLWYIELALA
SLFSLNALFDFWRYFKYTVAPTSLVVSPGQQALLGLKQAVVQTTPPRDLAATQISPSPPSPSIQGQSVLS
YSPSRSPSTSPKFATSCMTGYSPQLQGLSSGGLGSYSPGVTYSPVSGYNKLASFSLSPSSPYPTTVGPVE
SSGLRARYRSPPTVYNSPTDKEDYMTDLRTLDTFLRSEEEKQHRVKLGSPDSTSPSTSPTFWNYSRSVGD
YAQTLKKFQYQLACRSQAPCANKDEADLISKQAAEEVWARVTMNRQLLDHMDSWTAKFRNWISETILVPL
VQEIESVSTQMRRMGCPELQIGEASVTSLKQAALVRAPLIPTLNAIVQYLDLTPNQEYLFERIKELSQGG
CMSSFRWNRGGDFKGRKWDTDLPTDSAIIMHVFCTYLDSRLPPHPKYPDGKTFTSQHFVQTPNKPDVTNE
NVFCIYQSAVNPPHYELIYQRHVYNLPKGRNNMFHTLLMFLYIIKTKESGMLGRVNLGLSGVNILWIFGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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