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Report for CCDS19959.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19959.1 Public Mus musculus 6 Opn1sw 23 108 98 CCDS HistoryNCBI Gene:12057Re-query CCDS DB by CCDS ID:19959.1Re-query CCDS DB by GeneID:12057See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19959.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080428.12 ENSMUSP00000079289.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080428.12Link to Ensembl Protein Viewer:ENSMUSP00000079289.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000080428Re-query CCDS DB by Protein ID:ENSMUSP00000079289
Original member Current member NCBI NM_007538.3 NP_031564.1 Accepted alive Link to Nucleotide Sequence:NM_007538.3Link to Protein Sequence:NP_031564.1Re-query CCDS DB by Nucleotide ID:NM_007538Re-query CCDS DB by Protein ID:NP_031564Link to BLAST:NP_031564.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031564.1 346 P51491 346 100% 0 0

Chromosomal Locations for CCDS 19959.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 29377942 29378061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29378731 29378970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29379323 29379488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29379719 29379887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29380070 29380415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGTCAGGAGAGGATGACTTTTACCTGTTTCAGAATATCTCTTCGGTGGGGCCCTGGGATGGGCCTCAGT
ACCACCTTGCTCCTGTCTGGGCCTTCCGCCTCCAGGCAGCCTTCATGGGATTTGTCTTCTTTGTGGGGAC
CCCACTCAATGCCATAGTGCTGGTGGCCACACTGCATTACAAAAAGTTGCGACAGCCCCTCAACTATATT
CTGGTCAATGTATCCCTCGGGGGCTTCCTCTTCTGCATCTTCTCTGTCTTCACAGTCTTCATCGCCAGCT
GTCACGGATACTTCCTCTTTGGTCGCCATGTTTGTGCTCTGGAGGCCTTCTTGGGCTCTGTAGCAGGTCT
AGTGACAGGATGGTCATTGGCTTTCCTGGCTTTTGAACGCTACGTTGTCATCTGTAAACCCTTCGGCAGC
ATCCGCTTCAACTCCAAGCATGCACTGATGGTGGTCCTGGCTACTTGGATTATTGGTATCGGGGTGTCCA
TCCCACCCTTTTTTGGCTGGAGCAGGTTCATCCCTGAGGGCCTGCAGTGCTCCTGTGGCCCAGACTGGTA
CACTGTGGGCACCAAGTATCGAAGCGAGTACTACACCTGGTTCCTCTTCATCTTCTGTTTCATCATTCCT
CTTTCCCTCATCTGCTTCTCCTACTCCCAGTTGCTGAGGACTCTCAGAGCTGTGGCAGCTCAGCAGCAAG
AGTCTGCTACGACACAAAAGGCTGAACGGGAGGTGAGTCATATGGTGGTGGTGATGGTGGGATCCTTCTG
TCTCTGCTACGTGCCCTATGCTGCCCTGGCCATGTACATGGTCAACAATCGGAACCACGGGCTGGACTTA
CGGCTTGTCACCATCCCCGCCTTCTTTTCCAAGAGCTCCTGTGTCTACAACCCCATCATCTACTGCTTCA
TGAATAAGCAGTTCCGGGCTTGCATTCTGGAGATGGTGTGCAGGAAGCCCATGGCAGACGAATCTGACGT
GTCTGGCTCTCAGAAAACAGAAGTTTCTACTGTCTCTTCTAGCAAAGTTGGCCCTCACTGA

Translation (346 aa):
MSGEDDFYLFQNISSVGPWDGPQYHLAPVWAFRLQAAFMGFVFFVGTPLNAIVLVATLHYKKLRQPLNYI
LVNVSLGGFLFCIFSVFTVFIASCHGYFLFGRHVCALEAFLGSVAGLVTGWSLAFLAFERYVVICKPFGS
IRFNSKHALMVVLATWIIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSEYYTWFLFIFCFIIP
LSLICFSYSQLLRTLRAVAAQQQESATTQKAEREVSHMVVVMVGSFCLCYVPYAALAMYMVNNRNHGLDL
RLVTIPAFFSKSSCVYNPIIYCFMNKQFRACILEMVCRKPMADESDVSGSQKTEVSTVSSSKVGPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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