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Report for CCDS19823.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19823.1 Public Mus musculus 5 Brat1 23 108 98 CCDS HistoryNCBI Gene:231841Re-query CCDS DB by CCDS ID:19823.1Re-query CCDS DB by GeneID:231841See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19823.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041588.12 ENSMUSP00000036016.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041588.12Link to Ensembl Protein Viewer:ENSMUSP00000036016.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000041588Re-query CCDS DB by Protein ID:ENSMUSP00000036016
Original member NCBI NM_181066.3 NP_851411.1 Updated not alive Link to Nucleotide Sequence:NM_181066.3Link to Protein Sequence:NP_851411.1Re-query CCDS DB by Nucleotide ID:NM_181066Re-query CCDS DB by Protein ID:NP_851411
Current member NCBI NM_181066.4 NP_851411.1 Accepted alive Link to Nucleotide Sequence:NM_181066.4Link to Protein Sequence:NP_851411.1Re-query CCDS DB by Nucleotide ID:NM_181066Re-query CCDS DB by Protein ID:NP_851411Link to BLAST:NP_851411.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_851411.1 822 Q8C3R1-1 822 100% 0 0

Chromosomal Locations for CCDS 19823.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140705970 140706096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140710138 140710292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140711506 140711653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140712505 140712877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140713053 140713172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140714293 140714384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140714567 140714685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140714760 140714946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140715139 140715212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140716692 140716794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140716929 140717027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140717144 140717319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140717902 140718597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2469 nt):
ATGGACCCAGAATGCTCCAGGCTCCTCCCGGCTCTCTGTGCTGTTTTGGCAGATCCCAGACAGCTGGTGG
CAGATGACACCTGCTTGGAGAAACTGCTGGACTGGTTTAAAACAGTGACAGAGGCAGAGTCTAGCCTCCA
ACTACTACAGGACCATCCCTGCTTAATGGAGCTCCTGTCCCATGTGCTGAAGCCACAGGACGTGAGCCCT
AGGGTCCTCTCCTTTGCTCTGCGCCTTGTTGGGGTCTTCGCAGCCCAGGAAGACTGTTTTGAGTACCTTC
AGCAGGGAGAGTTGTTGCTGGGGCTCTTTGGGGAGTCAGGTGCCCCCGGCTGGGCAGCCTGGAGCATCCC
AAGTGTGCGCAGCGGCTGGATCCAGGGTCTGTGCTACCTGGCACACCACCCTAGCGCCCTGCACTTCCTG
GCTGACAGTGGTGCTGTGGACACGCTCTTCTCCTTGCAGGGAGACCCCAGCCTGTTCGTCGCCTCAGCAG
CCAGCCAGCTCCTAGTACATATCCTGGCTCTGTCCATGCAAGGTGGAGCCCCAGGGTCCCCCGTCCCTGA
AGCTGCTGCTTGGCCTATGTGTGCCCAGAAGATTGTGAACCATGTGGATGAGTCCCTGCATGCCAAAGCC
ACCCCCCAGGTCACACAGGCCTTGAATGTCCTGACTACGACCTTCGGGCGCTGCCATAACCCCTGGACAG
GGGTCCTCTGGGAGCGGCTAAGTCCCCCTGTTGCCCGCCTGTTTGAGAGAGACCCCATTCCAGCCGTGCA
CGCGCTCATGGACCTTCTTCTTAGTGTGGCCAGGTCGCCTGTGTTGAATTTTGCAGCCTGTGGCCTGTGG
GAGATGCTGGCCCAGACTCTGAGCCGCCTGAGCCCCATACAAGCTGGGCCTCTAGCCCTGGGGACCCTGA
AACTTCAGCACTGTCCCCAGGAATTGAGGACCCAGGCCTTTGGAGTCCTCCTACAGCCACTGGCCTGTAT
CCTGAAAGCTACCACTCAGGCCCCTGGACCTCCAGGCTTGCTGGATGGGACTGTGGGTAGCTTGCTGACT
GTGGATATACTCTTGGCTTCAAAGTCAGCCTGTGTGGGACTCCTTTGCCAGACTCTGGCTCACCTGGAGG
AGCTGCAGATGCTGCCCCAGTGCCCCTCACCCTGGCCACAGGTGCATCTGCTGCAAGCTGCTTTGACTAT
ATTGCATCTCTGTGATGGCTCAGCGGACCCCAGCTCCAGTGCAGGAGGCCGTCTCTGTGGGACTCTGGGT
GGCTGTGTTCGTGTCCAGCGAGCAGCCCTTGACTTCTTGGGGACCCTGTCTCAGGGGACAAGCCCCCTGG
AGTTGGTTCTGGAGGTATTTGCTGTTCTCCTGAAGACCCTGGAGAGCCCAGAGTCCAGCCCCATGGTCCT
AAAGAAGGCCTTCCAGGCCACACTCAGATGGCTCCAGAACCCACACAAGACCCCCAGCAGCTCTGATCTC
AGCTCCGACGCCCTGCTGTTTCTCGGAGAGCTGTTCCCCATACTACAGAAGCGCCTATGCAGCCCATGTT
GGGAGGTGAGGGACTCTGCCCTGGAGTTCCTGACGCATCTGATCCGACACTGGGGAGGGCAGGCTGACTT
CAGAGAGGCACTGCGTTCCTCAGAAGTACCCACACTTGCCCTCCAGCTTCTCCAAGACCCAGAGAGTTAC
GTCCGAGCAAGTGCCGTGGGTGCCGCTGGGCAGCTCTCCAGCCAGGGTCTGCAGGCCGCTCCCGCTAGCC
CCGAGAACTCGCAGGCCCAACAGGGCCTACTCATGGACCTTATGCATATCCTGTCCACTGACTCAGAGGG
CTTCCCTCGAAGGGCTGTGTTACGGGTCTTCACGGACTGGCTGAGGGATGGCCATGCTGACGTGGTTCGA
GACACGGAGTGGTTCGTGGCCACTGTTCTCCAGGCAGTGAGCCGGGATCTGGACTGGGAGGTCCGAGTGC
AGGGTTTGGAGCTGGCACGGGTGTTCCTCACCCAGGCACTGGGCCAGCCCAGCCTCCACTGTCCCTATAC
AGTGGGCCTGCCCAGGGCCTCCTCTCCCCGCCCACACCCGGAATTCTTGCAGACTCTCTGCCGTCTGCCG
CTCTTTGAGTTTGCCTTTTGTGCCTTGCTTGACTGTGACCGACCGGTGGCCCAAAAGGCCTGTGACCTGC
TCCTCTTCTTGAGGGACAAGACAGTTCCCTGCAGTAGCCCTCGGGAGGCAGGGGACAGCCCCAACTCAGC
CTCAGTGGAGGCTGCCCTGCAGAGGTGGCGGGAAGGAGAGCAGGCCCAGCCCCTAGGGGACCTGGATCCT
GAGGCCATGCTAGCCATCCTCAGGGCCTTAGACCTGGAGGGCCTGCAGGGCAGGCTGGCCAAGAGCAGCG
ACCATGTGGAGAAGAGCCCACAGTCCCTGCTGCAGGACATGCTGGCCACGGTGGGTGTGTTGGAGGAGAA
CGAAGCTGACTGCTACTAA

Translation (822 aa):
MDPECSRLLPALCAVLADPRQLVADDTCLEKLLDWFKTVTEAESSLQLLQDHPCLMELLSHVLKPQDVSP
RVLSFALRLVGVFAAQEDCFEYLQQGELLLGLFGESGAPGWAAWSIPSVRSGWIQGLCYLAHHPSALHFL
ADSGAVDTLFSLQGDPSLFVASAASQLLVHILALSMQGGAPGSPVPEAAAWPMCAQKIVNHVDESLHAKA
TPQVTQALNVLTTTFGRCHNPWTGVLWERLSPPVARLFERDPIPAVHALMDLLLSVARSPVLNFAACGLW
EMLAQTLSRLSPIQAGPLALGTLKLQHCPQELRTQAFGVLLQPLACILKATTQAPGPPGLLDGTVGSLLT
VDILLASKSACVGLLCQTLAHLEELQMLPQCPSPWPQVHLLQAALTILHLCDGSADPSSSAGGRLCGTLG
GCVRVQRAALDFLGTLSQGTSPLELVLEVFAVLLKTLESPESSPMVLKKAFQATLRWLQNPHKTPSSSDL
SSDALLFLGELFPILQKRLCSPCWEVRDSALEFLTHLIRHWGGQADFREALRSSEVPTLALQLLQDPESY
VRASAVGAAGQLSSQGLQAAPASPENSQAQQGLLMDLMHILSTDSEGFPRRAVLRVFTDWLRDGHADVVR
DTEWFVATVLQAVSRDLDWEVRVQGLELARVFLTQALGQPSLHCPYTVGLPRASSPRPHPEFLQTLCRLP
LFEFAFCALLDCDRPVAQKACDLLLFLRDKTVPCSSPREAGDSPNSASVEAALQRWREGEQAQPLGDLDP
EAMLAILRALDLEGLQGRLAKSSDHVEKSPQSLLQDMLATVGVLEENEADCY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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