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Report for CCDS19692.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19692.1 Public Mus musculus 5 Stx2 23 108 98 CCDS HistoryNCBI Gene:13852Re-query CCDS DB by CCDS ID:19692.1Re-query CCDS DB by GeneID:13852See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19692.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031378.13 ENSMUSP00000031378.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031378.13Link to Ensembl Protein Viewer:ENSMUSP00000031378.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031378Re-query CCDS DB by Protein ID:ENSMUSP00000031378
Original member Current member NCBI NM_007941.3 NP_031967.2 Accepted alive Link to Nucleotide Sequence:NM_007941.3Link to Protein Sequence:NP_031967.2Re-query CCDS DB by Nucleotide ID:NM_007941Re-query CCDS DB by Protein ID:NP_031967Link to BLAST:NP_031967.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031967.2 289 Q00262 289 99.654% 0 1

Chromosomal Locations for CCDS 19692.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 128987762 128987842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 128988802 128988912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 128990964 128991101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 128991203 128991276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 128992180 128992288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 128993495 128993568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 128994796 128994870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 128996362 128996461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 128999510 128999587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129008394 129008423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGCGGGACCGGCTGCCCGACCTCACGGCGTGTAGGACAAACGACGATGGAGACACTGCTGTCGTCATTG
TGGAGAAGGATCATTTCATGGACGGTTTCTTCCATCAGGTAGAGGAGATTCGAAGCAGCATAGCCAGGAT
TGCTCAGCATGTAGAAGACGTGAAGAAGAACCACAGCATCATCCTGTCTGCTCCAAACCCAGAAGGAAAA
ATAAAAGAAGAGCTGGAGGACCTGAACAAAGAGATCAAGAAAACTGCTAACAGGATCCGGGGCAAGCTGA
AGTCTATTGAGCAGAGCTGTGATCAGGACGAGAATGGGAACCGAACTTCAGTGGATCTGCGGATACGAAG
GACCCAGCACTCGGTGCTGTCACGGAAGTTTGTGGACGTCATGACAGAATACAATGAAGCGCAGATCCTG
TTCCGGGAGCGAAGCAAAGGCCGCATCCAGCGCCAGCTGGAGATCACTGGGAGGACCACCACTGACGACG
AGCTGGAAGAGATGCTGGAGAGCGGGAAGCCGTCCATCTTCATCTCGGATATTATATCAGATTCACAAAT
CACTAGGCAAGCTCTCAATGAGATCGAGTCCCGCCACAAAGACATCATGAAGCTGGAGACCAGCATCCGA
GAGCTGCACGAGATGTTCATGGATATGGCCATGTTTGTCGAGACTCAGGGTGAAATGGTCAACAACATCG
AGAGAAATGTGGTGAACTCTGTAGATTACGTGGAACATGCCAAGGAAGAGACGAAGAAAGCCATCAAATA
CCAGAGCAAGGCCAGGCGGAAAAAGTGGATAATTGCTGCTGTGGCGGTGGCTGTCATTGCCGTCCTGGCT
CTAATCATTGGCTTGTCGGTTGGCAAATGA

Translation (289 aa):
MRDRLPDLTACRTNDDGDTAVVIVEKDHFMDGFFHQVEEIRSSIARIAQHVEDVKKNHSIILSAPNPEGK
IKEELEDLNKEIKKTANRIRGKLKSIEQSCDQDENGNRTSVDLRIRRTQHSVLSRKFVDVMTEYNEAQIL
FRERSKGRIQRQLEITGRTTTDDELEEMLESGKPSIFISDIISDSQITRQALNEIESRHKDIMKLETSIR
ELHEMFMDMAMFVETQGEMVNNIERNVVNSVDYVEHAKEETKKAIKYQSKARRKKWIIAAVAVAVIAVLA
LIIGLSVGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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