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Report for CCDS51606.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51606.1 Public Mus musculus 5 Pgam5 23 108 98 CCDS HistoryNCBI Gene:72542Re-query CCDS DB by CCDS ID:51606.1Re-query CCDS DB by GeneID:72542See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51606.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112505.8 ENSMUSP00000108124.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112505.8Link to Ensembl Protein Viewer:ENSMUSP00000108124.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112505Re-query CCDS DB by Protein ID:ENSMUSP00000108124
Original member Current member NCBI NM_001163538.1 NP_001157010.1 Accepted alive Link to Nucleotide Sequence:NM_001163538.1Link to Protein Sequence:NP_001157010.1Re-query CCDS DB by Nucleotide ID:NM_001163538Re-query CCDS DB by Protein ID:NP_001157010Link to BLAST:NP_001157010.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157010.1 288 Q8BX10-1 288 100% 0 0

Chromosomal Locations for CCDS 51606.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 110260287 110260437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110265512 110265645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110265740 110265828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110265911 110266036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110267087 110267265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110269652 110269839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGGCTTTCCGGCAGGCGCTTCAGCTGGCGGCCTGTGGTCTGGCCGGTGGCTCGGCCGCTGTTCTCTTCT
CGGCGGTCGCGGTAGGGAAGCCGCGAGGTGGCGGGGATGCAGACACGCGCGCGACCGAGCCGCCGGCCTG
GACAGGAGCGCGAGCCGGGCGCGGCGTCTGGGACACCAACTGGGACAGGCGAGAGCCACTGTCACTCATT
AACCTGAAGAAAAGGAATGTGGAATCTGGAGAAGACGAGTTGACATCCAGGCTGGATCACTATAAGGCCA
AGGCCACAAGGCACATCTTCCTCATCCGGCATTCCCAGTACCATGTGGATGGCTCCCTGGAGAAGGACCG
CACCCTGACACCATTAGGTCGGGAACAGGCTGAACTCACGGGGCTCCGACTTGCAAGCCTGGGATTAAAG
TTTAATAAAATTGTCCATTCCTCTATGACCCGTGCAGTAGAGACCACAGACATCATCAGCAAGCACCTGC
CAGGTGTCTCCAGAGTCAGCACAGACTTGCTACGGGAAGGTGCCCCCATTGAACCGGATCCACCTGTCTC
TCACTGGAAGCCAGAGGCTGTGCAGTATTATGAAGATGGAGCCCGGATTGAAGCTGCCTTCAGGAACTAC
ATCCACCGAGCTGATGCCAGGCAGGAGGAGGACAGCTATGAGATCTTCATATGCCATGCCAATGTCATCC
GCTATATTGTTTGTAGAGCGTTGCAGTTTCCCCCAGAAGGTTGGCTCCGCCTGTCCCTCAACAACGGCAG
TATCACCCACCTGGTGATTCGACCCAATGGTCGTGTGGCACTCAGGACCCTTGGGGACACAGGGTTCATG
CCCCCAGACAAGATTACTCGGTCCTGA

Translation (288 aa):
MAFRQALQLAACGLAGGSAAVLFSAVAVGKPRGGGDADTRATEPPAWTGARAGRGVWDTNWDRREPLSLI
NLKKRNVESGEDELTSRLDHYKAKATRHIFLIRHSQYHVDGSLEKDRTLTPLGREQAELTGLRLASLGLK
FNKIVHSSMTRAVETTDIISKHLPGVSRVSTDLLREGAPIEPDPPVSHWKPEAVQYYEDGARIEAAFRNY
IHRADARQEEDSYEIFICHANVIRYIVCRALQFPPEGWLRLSLNNGSITHLVIRPNGRVALRTLGDTGFM
PPDKITRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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