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Report for CCDS19293.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19293.1 Public Mus musculus 5 Cckar 23 108 98 CCDS HistoryNCBI Gene:12425Re-query CCDS DB by CCDS ID:19293.1Re-query CCDS DB by GeneID:12425See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19293.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031093.4 ENSMUSP00000031093.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031093.4Link to Ensembl Protein Viewer:ENSMUSP00000031093.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000031093Re-query CCDS DB by Protein ID:ENSMUSP00000031093
Original member Current member NCBI NM_009827.2 NP_033957.1 Accepted alive Link to Nucleotide Sequence:NM_009827.2Link to Protein Sequence:NP_033957.1Re-query CCDS DB by Nucleotide ID:NM_009827Re-query CCDS DB by Protein ID:NP_033957Link to BLAST:NP_033957.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033957.1 436 O08786 436 100% 0 0

Chromosomal Locations for CCDS 19293.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 53699756 53700312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53701223 53701350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53702860 53703121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53706254 53706505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53707246 53707357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGGATGTGGTCGACAGCCTTCTTATGAATGGGAGCAACATCACTCCCCCCTGTGAACTCGGGCTGGAAA
ATGAGACGCTTTTCTGCCTGGATCAACCTCAGCCTTCAAAAGAATGGCAGTCTGCAGTGCAGATTCTCCT
GTACTCCTTCATATTCCTTCTCAGTGTGCTGGGGAACACGCTGGTTATCACGGTGCTGATTCGAAACAAG
AGGATGCGGACTGTCACCAACATCTTCCTGCTGTCCCTGGCTGTCAGTGACCTCATGCTTTGCCTCTTCT
GCATGCCGTTCAACCTCATCCCCAACCTGCTCAAGGATTTCATCTTCGGAAGTGCCGTGTGCAAGACTAC
CACCTACTTCATGGGCACTTCCGTGAGTGTTTCCACCTTCAACCTGGTAGCCATCTCTCTGGAGAGATAC
GGTGCCATCTGCAGACCCCTACAATCCCGCGTCTGGCAAACAAAGTCCCATGCTTTGAAGGTCATCGCTG
CCACCTGGTGCCTCTCCTTTACCATCATGACTCCGTACCCCATTTACAGCAACTTGGTGCCTTTTACTAA
AAACAATAACCAGACGGCGAACATGTGCCGCTTCCTGTTGCCAAGTGACGCTATGCAGCAGTCCTGGCAA
ACATTCCTGCTACTCATCCTCTTCCTTATCCCTGGGGTTGTGATGGTGGTGGCTTACGGACTCATCTCTC
TGGAACTCTACCAAGGAATCAAATTTGATGCCAGCCAGAAGAAATCTGCTAAAGAGAAGAGGCTAAGCAG
CGGCGGCGGCGGCGGCGGCGGTAGCAGCAGCAGCCGATATGAGGATAGCGATGGCTGTTACTTGCAGAAA
TCCAGGCCTCCAAGGAAGCTAGAGCTGCAGCAGCTGTCAACCAGCAGCAGTGGTGGCAGAATCAACCGGA
TCAGGAGCAGTGGTTCTGCTGCCAACCTGATCGCCAAGAAGCGCGTGATCCGCATGCTCATTGTCATTGT
GGTCCTCTTCTTCCTGTGCTGGATGCCCATCTTCAGTGCCAATGCCTGGCGGGCATATGACACGGTTTCT
GCCGAGAAACACCTCTCAGGGACCCCCATCTCCTTCATCCTCCTCCTCTCCTACACCTCCTCCTGTGTCA
ACCCCATTATCTACTGCTTCATGAACAAACGCTTTCGCCTGGGCTTCATGGCCACCTTCCCCTGTTGCCC
GAATCCTGGTCCCACCGGGGTGAGAGGAGAAGTGGGAGAGGAGGAAGATGGAAGGACCATAAGGGCATCC
CTGTCCCGGTATTCCTACAGCCACATGAGCACCTCTGCCCCACCCCACTGA

Translation (436 aa):
MDVVDSLLMNGSNITPPCELGLENETLFCLDQPQPSKEWQSAVQILLYSFIFLLSVLGNTLVITVLIRNK
RMRTVTNIFLLSLAVSDLMLCLFCMPFNLIPNLLKDFIFGSAVCKTTTYFMGTSVSVSTFNLVAISLERY
GAICRPLQSRVWQTKSHALKVIAATWCLSFTIMTPYPIYSNLVPFTKNNNQTANMCRFLLPSDAMQQSWQ
TFLLLILFLIPGVVMVVAYGLISLELYQGIKFDASQKKSAKEKRLSSGGGGGGGSSSSRYEDSDGCYLQK
SRPPRKLELQQLSTSSSGGRINRIRSSGSAANLIAKKRVIRMLIVIVVLFFLCWMPIFSANAWRAYDTVS
AEKHLSGTPISFILLLSYTSSCVNPIIYCFMNKRFRLGFMATFPCCPNPGPTGVRGEVGEEEDGRTIRAS
LSRYSYSHMSTSAPPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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