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Report for CCDS19151.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19151.1 Public Mus musculus 5 Dnajb6 23 108 98 CCDS HistoryNCBI Gene:23950Re-query CCDS DB by CCDS ID:19151.1Re-query CCDS DB by GeneID:23950See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19151.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000008733.14 ENSMUSP00000008733.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000008733.14Link to Ensembl Protein Viewer:ENSMUSP00000008733.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000008733Re-query CCDS DB by Protein ID:ENSMUSP00000008733
Original member Current member NCBI NM_001037940.4 NP_001033029.1 Accepted alive Link to Nucleotide Sequence:NM_001037940.4Link to Protein Sequence:NP_001033029.1Re-query CCDS DB by Nucleotide ID:NM_001037940Re-query CCDS DB by Protein ID:NP_001033029Link to BLAST:NP_001033029.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033029.1 365 O54946-1 365 100% 0 0

Chromosomal Locations for CCDS 19151.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 29748371 29748435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29750938 29751047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29752397 29752459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29753542 29753652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29764399 29764530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29765506 29765647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29766325 29766395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29781130 29781450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29785031 29785113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGGTGGATTACTATGAAGTGCTGGGCGTGCAGAGACATGCCTCACCTGAGGACATTAAAAAGGCGTATC
GAAAACAGGCACTTAAATGGCACCCGGACAAAAATCCTGAAAATAAAGAAGAAGCAGAGCGGAAGTTCAA
ACAAGTAGCTGAGGCATATGAAGTGTTATCGGATGCTAAAAAGCGGGACATCTACGACAAATATGGCAAA
GAAGGATTAAATGGTGGTGGAGGAGGAGGTGGAATTCATTTTGACAGTCCATTTGAGTTTGGCTTCACAT
TCCGGAACCCAGATGATGTCTTCAGGGAATTTTTTGGTGGAAGGGACCCATTTTCATTTGACTTCTTTGA
AGACCCATTTGATGACTTTTTTGGAAACCGAAGGGGTCCCCGAGGAAATAGAAGCCGAGGTGCCGGCTCA
TTTTTCTCTACCTTCAGTGGATTTCCTTCTTTTGGAAGTGGATTTCCTGCTTTTGATACAGGCTTCACTC
CATTTGGGTCACTAGGTCATGGGGGTCTCACTTCATTTTCTTCAACGTCATTTGGCGGCAGTGGAATGGG
CAACTTCAAATCAATATCAACTTCAACTAAGATAGTTAATGGCAAAAAAATCACGACAAAGAGGATTGTG
GAGAACGGTCAAGAAAGAGTAGAAGTTGAAGAAGATGGGCAGTTAAAGTCCTTGACAATAAATGGTGTGG
CCGACGAGAACGCCCTTGCAGAAGAATGCCAGCGGAGAGGCCAACCCACACCAGCTCTGGCCCCTGGCCC
GGCCCCAGCACCAGTCCGGGTCCCCTCCCAGGCCCGGCCCCTGGCCCCAACTCCAGCCCCAACTCCAGCC
CCAACTCCAGCCCCAGCTCCAGCCCAGACTCCGGCCCCTTCTGTCAGCACCCGCCCACAGAAGCCACCCA
GGCCTGCCCCAACGGCCAAACTTGGGTCTAAAAGCAACTGGGAAGATGACGAGCAGGACAGGCAGCGGGT
TCCTGGCAACTGGGATGCCCCTATGACCTCAGCAGGGCTCAAAGAAGGTGGCAAGAGGAAGAAGCAGAAG
CAGAAAGAGGACTTGAAGAAGAAGAAGTCGACCAAAGGGAACCATTAG

Translation (365 aa):
MVDYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGK
EGLNGGGGGGGIHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDFFEDPFDDFFGNRRGPRGNRSRGAGS
FFSTFSGFPSFGSGFPAFDTGFTPFGSLGHGGLTSFSSTSFGGSGMGNFKSISTSTKIVNGKKITTKRIV
ENGQERVEVEEDGQLKSLTINGVADENALAEECQRRGQPTPALAPGPAPAPVRVPSQARPLAPTPAPTPA
PTPAPAPAQTPAPSVSTRPQKPPRPAPTAKLGSKSNWEDDEQDRQRVPGNWDAPMTSAGLKEGGKRKKQK
QKEDLKKKKSTKGNH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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