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Report for CCDS19058.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19058.1 Public Mus musculus 4 Ttll10 23 108 98 CCDS HistoryNCBI Gene:330010Re-query CCDS DB by CCDS ID:19058.1Re-query CCDS DB by GeneID:330010See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19058.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051509.14 ENSMUSP00000055671.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051509.14Link to Ensembl Protein Viewer:ENSMUSP00000055671.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000051509Re-query CCDS DB by Protein ID:ENSMUSP00000055671
Original member Current member NCBI NM_029264.2 NP_083540.1 Accepted alive Link to Nucleotide Sequence:NM_029264.2Link to Protein Sequence:NP_083540.1Re-query CCDS DB by Nucleotide ID:NM_029264Re-query CCDS DB by Protein ID:NP_083540Link to BLAST:NP_083540.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083540.1 675 A4Q9F3-2 675 99.2593% 0 5

Chromosomal Locations for CCDS 19058.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 156034913 156035451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156035746 156035839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156036137 156036253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156043047 156043187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156043626 156043797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156044719 156044890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156045325 156045410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156046884 156047010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156047087 156047205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156047350 156047482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156047563 156047643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156048292 156048495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156048583 156048625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2028 nt):
ATGGCCCTACACCCACAGGCCGGAAGGCCTCACAGAGATGGAAGGCTGGGACATCGGGCTGCTCGAAGAC
CCCGAAGGGGTATAGGGACTACATCTGCCTCAAGGGTTCCTCGCCCTGGTGCCCTTATGCCTGCAACACG
AAACCGTCCAAGATTCATCCACTGCCGGGGTCAGCCCCCTCGAACCCGTGTCAGCTCCAAGAGATCCAAA
CGGTCCAGAATCCATCCGTGCCACACTGAGGTGCCAGGCTGGACCCATGAGAAACAGATGGGGAGCAGCG
TCAAGGAAAGGCTCCGGCCTGAGCTAAGTCAGCTGGACCAAGATGCAGACGACCTGGAGGAAGAAGAAGC
TGCCAGACTCCCAGTGACCTCCCCGGACGGGCTCCTGATGGAAGGAGACAAGCAGCCCAGTCCCGGTCAG
GGCCCTTTCTTCTACATTGGAGGCACCAACGGAGCATCAATAATCAGCAACTACTGTGAGAGCAAGGGCT
GGCAACGCACTCAGGACAGCCACTGTGAGGACTACAAGCTAAAGTGGTGTGAGATCAAGTGCAGGGACAA
CTACTGCAGCTTTCGGGAAGGCCAGCAGTTGCTGTTCCAGCTCCCCAACAACAAGCTTCTTACGACCAAG
ATCGGGTTGCTCAGTGCTCTGCGGGAGCACGCACGCACTTTGAGCAAAGCCAGGATGCTGCCCAGTACCC
AAACCAAGGTCCTGAAAATGGAAGAGTTTTTTCCAGAGACCTATCGGCTGGACATCAGAGACGAGAGGCA
GGCTTTCTTCGCTCTATTTGATGAAACCCAGATGTGGATCTGCAAACCTACGGCCTCCAACCAGGGAAAG
GGCATCTTTCTGATCAGGAGCCAGGAGGAGGCTGCTGCCCTGCAGGCCAAGACCCAGAGCATTGAGGATG
ACCCCATCTACCGCAAGATGCCCTTCCGTGCACCACAGGCGCGAGTGGTGCAGAGATATGTCCAGAACCC
GCTGCTGCTAGATGGGAAGAAGTTTGATGTGCGCTCCTACATGCTCATTGCCTGTGCCATGCCTTACATG
GTCTTTTTTGGCCATGGCTATGCCCGCCTCACCCTCAGCCTGTATAACCCTCATTCCAGTGACCTCAGTG
GTCATTTGACCAATCAGTTCATGCAGAAGAAGAGCCCCCTGTACACGCTGCTGAAGGAGAGCACCGTGTG
GACCATGGAGCACCTCAACCGATACATCAATGACAAATTTAGGAAGACCAAGGGCCTCCCCAGAGATTGG
GTCTTCACCACCTTCACGAAGCGGATGCAGCAGATCATGTCCCACTGCTTCCTGGCTGTCAAGTCCAAGC
TGGAGTGCAAGCTGGGCTACTTTGACCTCATTGGCTGTGACTTCCTGATTGATGAAAACTTCAAGGTGTG
GCTGCTGGAGATGAACGCCAACCCTGCCCTGCATACCAACTGTGAAGTCCTGAAGGCAGTGATCCCCGGA
GTGGTTATAGAGACCTTGGACCTGGCGCTTGAGACCTGCCAAAAGAGCTTGCACAGTCAGAAGATGCTGC
CTCTGCTGTCACAGCGTCGCTTTGTGCTCCTTTACAACGGGGAGACTACGGACTTGTGGCCGCGCTTGGC
GAGCTCGCGCCCACTTAACCGCTTGCCTAACCCTCACCCTAACCCTAACCCTAACCCTCACCCTCACCCT
CACCCTCACCCTAACCCTAACCCTCACCCTCACCCTCACCCTAACGCTAACCCTCACCCTCCCCGGCCCA
CCTGTGAAGCCGCATCCTCTGCGCTTTCCTCCGCACGGGCCGCTATCTCAGAACGGCCTGGTGCACGCAA
GTCGATGCCCTCCAGGGGAGCTCCCGTGTGCACACCCCGCAAATCGCGGCTGTCTGACTCGAGCGGTAGC
TCCATAGCGGAGTCTGAGCCCTCTCTCTGTTCTGGGTCCCTGGAAGGCAGCAGGGACACAGCCCGGGAAC
CCTCCCTGGGTCCGCCCGAGGAGGAGCGCGAGGAGGAACAGAGAAGTACGAGCCATCGAGGCTCCTAG

Translation (675 aa):
MALHPQAGRPHRDGRLGHRAARRPRRGIGTTSASRVPRPGALMPATRNRPRFIHCRGQPPRTRVSSKRSK
RSRIHPCHTEVPGWTHEKQMGSSVKERLRPELSQLDQDADDLEEEEAARLPVTSPDGLLMEGDKQPSPGQ
GPFFYIGGTNGASIISNYCESKGWQRTQDSHCEDYKLKWCEIKCRDNYCSFREGQQLLFQLPNNKLLTTK
IGLLSALREHARTLSKARMLPSTQTKVLKMEEFFPETYRLDIRDERQAFFALFDETQMWICKPTASNQGK
GIFLIRSQEEAAALQAKTQSIEDDPIYRKMPFRAPQARVVQRYVQNPLLLDGKKFDVRSYMLIACAMPYM
VFFGHGYARLTLSLYNPHSSDLSGHLTNQFMQKKSPLYTLLKESTVWTMEHLNRYINDKFRKTKGLPRDW
VFTTFTKRMQQIMSHCFLAVKSKLECKLGYFDLIGCDFLIDENFKVWLLEMNANPALHTNCEVLKAVIPG
VVIETLDLALETCQKSLHSQKMLPLLSQRRFVLLYNGETTDLWPRLASSRPLNRLPNPHPNPNPNPHPHP
HPHPNPNPHPHPHPNANPHPPRPTCEAASSALSSARAAISERPGARKSMPSRGAPVCTPRKSRLSDSSGS
SIAESEPSLCSGSLEGSRDTAREPSLGPPEEEREEEQRSTSHRGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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