NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS57318.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57318.1 Public Mus musculus 4 Tmem52 23 108 98 CCDS HistoryNCBI Gene:69671Re-query CCDS DB by CCDS ID:57318.1Re-query CCDS DB by GeneID:69671See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 57318.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000178238.7 ENSMUSP00000136919.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178238.7Link to Ensembl Protein Viewer:ENSMUSP00000136919.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178238Re-query CCDS DB by Protein ID:ENSMUSP00000136919
Original member Current member NCBI NM_027161.2 NP_081437.1 Accepted alive Link to Nucleotide Sequence:NM_027161.2Link to Protein Sequence:NP_081437.1Re-query CCDS DB by Nucleotide ID:NM_027161Re-query CCDS DB by Protein ID:NP_081437Link to BLAST:NP_081437.1

Chromosomal Locations for CCDS 57318.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155469145 155469210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155469303 155469346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155469444 155469503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155469989 155470167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155470271 155470530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGGCCCCGGGGCCGTCAGCCACACAGGGGATCCTGCTGCTGCTGCCTCTCCTGCCTCTGTCCCAGGTGA
CGCTGGGTTCCGCGGACCGCAACTGTGACCCCTCGGATCAGTGCCGCTGTCCCCGCAGGTGCCCGCCCCA
GGCCCGCTGGAGCAGCCTATGGCATGTGGGGCTCATCCTGCTCGCCATACTCCTGATGCTTTTGTGTGGG
GTCACAGCCAGCTGTGTACGATTCTGCTGCCTCAGGAAGCAGACGCACACCCAGTCACACACGCCAGCGG
CGTGGCAGCCCTGTGACGGGACAGTCATCCCAGTGGACAGTGATAGCCCCGCACACAGCACTGTGACCTC
CTACAGTTCCGTGCAGTACCCACTGGGCATGCGGCTGCCCCTGTACTTTGGAGAGCCAGACCCTGACTCC
ATGGTCCCTCCCACCTACAGCCTCTATGCGTCTGAGCTGCCACCCTCCTACGATGAAGTTGTGAAGATGA
TAAAAGCCAGGGAGGAAGTGGCAGCTCCCTCTGAGAAAACCAACTCTCTGCCTGAGGCCTTGGAGCCAGA
GACCACTGGAGGGCCCCAGGAGCCAGGCCCCAGTGCCCAGCGGCCCTAG

Translation (202 aa):
MAPGPSATQGILLLLPLLPLSQVTLGSADRNCDPSDQCRCPRRCPPQARWSSLWHVGLILLAILLMLLCG
VTASCVRFCCLRKQTHTQSHTPAAWQPCDGTVIPVDSDSPAHSTVTSYSSVQYPLGMRLPLYFGEPDPDS
MVPPTYSLYASELPPSYDEVVKMIKAREEVAAPSEKTNSLPEALEPETTGGPQEPGPSAQRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH