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Report for CCDS18994.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18994.1 Public Mus musculus 4 Espn 23 108 98 CCDS HistoryNCBI Gene:56226Re-query CCDS DB by CCDS ID:18994.1Re-query CCDS DB by GeneID:56226See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18994.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049305.13 ENSMUSP00000037982.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049305.13Link to Ensembl Protein Viewer:ENSMUSP00000037982.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049305Re-query CCDS DB by Protein ID:ENSMUSP00000037982
Original member Current member NCBI NM_019585.3 NP_062531.2 Accepted alive Link to Nucleotide Sequence:NM_019585.3Link to Protein Sequence:NP_062531.2Re-query CCDS DB by Nucleotide ID:NM_019585Re-query CCDS DB by Protein ID:NP_062531Link to BLAST:NP_062531.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062531.2 253 Q9ET47-8 253 99.6047% 0 1

Chromosomal Locations for CCDS 18994.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 152121121 152121265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152123617 152123628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152123714 152123793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152128069 152128553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152128770 152128809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGAACTCCCAGGGGCCTCTAGGTGGGGGCCATATACCCAGCACCAAATCTTTCAACATGATGTCCCCAA
CGGGTGATAACTCAGAGCTTCTGGCTGAGATAAAGGCGGGCAAGAGCCTGAAGCCGACACCGCAGAGCAA
GGGGCTGACAACCGTGTTCTCAGGCAGTGGGCAGCCAGCCTCCCAGGTAGGCACTGGCCGAGTGCCCCGC
CCGGGCTCCCAGTGCCTGCCCAGTGCTCAGCCCTACTGCTTCTCCCGGCAGCCTGAGTCACCGCAGCCTC
TGGTGTCACCTGCGCCATCTCGGACTCGGAGCCCCACCCCGCCAGCCTCTGGGTCTCAGCCACTGCTCAA
TGGCAGTGTGGTGCCGGCACCACCTGCCACCCCGGCACCTGGAGTCCATCTGGATGTGGAGGCCCTCATT
CCCACTCTTGATGAGCAGGGCCGGCCCATCCCGGAGTGGAAGCGCCAGGTGATGGTCCGCAAGCTGCAGC
AGAAGATGCAGGAGGAAGAGGAGCAGCGGAGGAAGGAGGAAGAGGAGGAGGCCCGGCTCGCCAGCCTGCC
TGCCTGGAGACGAGACATTCTTCGGAAGAAGCTGGAGGAGGAGAGGGAGCAGAAGCGAAAAGAGGAGGAG
CGGCAAAAGCTGGAGGAAATACAGAGGGCGAAAGAACAGTCGGAGAAGCTGCGGACACTAGGCTACGACG
AAGCCAAGCTCGCGCCCTGGCAGCGACAGGTCATCTTGAAGAAGGGGGAGATCCCTAAGTAA

Translation (253 aa):
MNSQGPLGGGHIPSTKSFNMMSPTGDNSELLAEIKAGKSLKPTPQSKGLTTVFSGSGQPASQVGTGRVPR
PGSQCLPSAQPYCFSRQPESPQPLVSPAPSRTRSPTPPASGSQPLLNGSVVPAPPATPAPGVHLDVEALI
PTLDEQGRPIPEWKRQVMVRKLQQKMQEEEEQRRKEEEEEARLASLPAWRRDILRKKLEEEREQKRKEEE
RQKLEEIQRAKEQSEKLRTLGYDEAKLAPWQRQVILKKGEIPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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