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Report for CCDS18486.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18486.1 Public Mus musculus 4 Tal1 23 108 98 CCDS HistoryNCBI Gene:21349Re-query CCDS DB by CCDS ID:18486.1Re-query CCDS DB by GeneID:21349See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18486.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030489.8 ENSMUSP00000030489.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030489.8Link to Ensembl Protein Viewer:ENSMUSP00000030489.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000030489Re-query CCDS DB by Protein ID:ENSMUSP00000030489
Original member Current member EBI ENSMUST00000162489.1 ENSMUSP00000124983.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162489.1Link to Ensembl Protein Viewer:ENSMUSP00000124983.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162489Re-query CCDS DB by Protein ID:ENSMUSP00000124983
Original member Current member EBI ENSMUST00000161601.7 ENSMUSP00000125202.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161601.7Link to Ensembl Protein Viewer:ENSMUSP00000125202.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161601Re-query CCDS DB by Protein ID:ENSMUSP00000125202
Original member NCBI NM_001287388.1 NP_001274317.1 Updated not alive Link to Nucleotide Sequence:NM_001287388.1Link to Protein Sequence:NP_001274317.1Re-query CCDS DB by Nucleotide ID:NM_001287388Re-query CCDS DB by Protein ID:NP_001274317
Current member NCBI NM_001287388.2 NP_001274317.1 Accepted alive Link to Nucleotide Sequence:NM_001287388.2Link to Protein Sequence:NP_001274317.1Re-query CCDS DB by Nucleotide ID:NM_001287388Re-query CCDS DB by Protein ID:NP_001274317Link to BLAST:NP_001274317.1
Original member NCBI NM_011527.3 NP_035657.1 Updated not alive Link to Nucleotide Sequence:NM_011527.3Link to Protein Sequence:NP_035657.1Re-query CCDS DB by Nucleotide ID:NM_011527Re-query CCDS DB by Protein ID:NP_035657
Current member NCBI NM_011527.4 NP_035657.1 Accepted alive Link to Nucleotide Sequence:NM_011527.4Link to Protein Sequence:NP_035657.1Re-query CCDS DB by Nucleotide ID:NM_011527Re-query CCDS DB by Protein ID:NP_035657Link to BLAST:NP_035657.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001274317.1 329 P22091 329 100% 0 0
NP_035657.1 329 P22091 329 100% 0 0

Chromosomal Locations for CCDS 18486.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 115063131 115063576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115064669 115064763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115068277 115068725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGACGGAGCGGCCGCCGAGCGAGGCGGCACGCAGTGACCCGCAACTAGAGGGACAGGACGCGGCCGAGG
CCCGCATGGCCCCCCCGCACCTAGTCCTGCTCAACGGCGTCGCCAAGGAGACGAGCCGCGCAGCCCCGGC
TGAGCCCCCCGTCATCGAGCTAGGAGCGCGCAGCGGCGCGGGGGGCGGCCCTGCCAGTGGGGGCGGTGCC
GCGAGGGACTTAAAGGGCCGCGACGCAGTAGCAGCCGAAGCTCGCCTTCGGGTGCCCACCACCGAGCTGT
GCAGACCTCCCGGACCCGCCCCGGCGCCCGCGCCCGCCTCGGCTCCTGCAGAGCTGCCTGGAGACGGCCG
CATGGTGCAGCTGAGCCCGCCCGCGCTGGCAGCCCCTGCCGGCCCCGGCCGAGCGCTGCTCTATAGCCTT
AGCCAGCCGCTCGCCTCACTAGGCAGTGGGTTCTTTGGGGAACCGGATGCCTTCCCCATGTTCACCAACA
ACAACCGGGTGAAGAGGAGGCCCTCCCCATATGAGATGGAGATTTCTGATGGTCCTCACACCAAAGTAGT
GCGGCGCATCTTCACCAACAGCCGGGAACGATGGCGGCAGCAGAATGTGAATGGGGCATTTGCTGAGCTC
AGAAAGCTGATCCCCACCCACCCACCAGACAAGAAACTAAGCAAGAATGAGATCCTCCGCCTTGCCATGA
AGTACATCAATTTCCTGGCCAAGTTACTCAATGACCAGGAGGAGGAAGGCACCCAGCGTGCCAAGCCTGG
CAAGGACCCCGTGGTGGGAGCTGGTGGGGGTGGGGCAGGGGGTGGCATCCCCCCTGAAGACCTTCTACAG
GACGTGCTTTCCCCCAACTCCAGCTGTGGCAGCTCTCTGGATGGGGCAGCCAGCCCGGACAGTTACACAG
AGGAGCCAACACCCAAGCACACTTCCCGCAGCCTCCATCCTGCCCTGCTGCCTGCCGCTGATGGGGCTGG
CCCCCGGTGA

Translation (329 aa):
MTERPPSEAARSDPQLEGQDAAEARMAPPHLVLLNGVAKETSRAAPAEPPVIELGARSGAGGGPASGGGA
ARDLKGRDAVAAEARLRVPTTELCRPPGPAPAPAPASAPAELPGDGRMVQLSPPALAAPAGPGRALLYSL
SQPLASLGSGFFGEPDAFPMFTNNNRVKRRPSPYEMEISDGPHTKVVRRIFTNSRERWRQQNVNGAFAEL
RKLIPTHPPDKKLSKNEILRLAMKYINFLAKLLNDQEEEGTQRAKPGKDPVVGAGGGGAGGGIPPEDLLQ
DVLSPNSSCGSSLDGAASPDSYTEEPTPKHTSRSLHPALLPAADGAGPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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