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Report for CCDS84777.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84777.1 Public Mus musculus 4 Elavl4 23 108 98 CCDS HistoryNCBI Gene:15572Re-query CCDS DB by CCDS ID:84777.1Re-query CCDS DB by GeneID:15572See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84777.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106598.7 ENSMUSP00000102208.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106598.7Link to Ensembl Protein Viewer:ENSMUSP00000102208.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106598Re-query CCDS DB by Protein ID:ENSMUSP00000102208
Original member Current member NCBI NM_001347178.1 NP_001334107.1 Accepted alive Link to Nucleotide Sequence:NM_001347178.1Link to Protein Sequence:NP_001334107.1Re-query CCDS DB by Nucleotide ID:NM_001347178Re-query CCDS DB by Protein ID:NP_001334107Link to BLAST:NP_001334107.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334107.1 366 Q61701-5 366 100% 0 0

Chromosomal Locations for CCDS 84777.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 110206332 110206659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 110209740 110209778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 110211426 110211651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 110213128 110213281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 110226545 110226648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 110251281 110251521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 110287233 110287241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGGTTATGATAATTAGCACCATGGAGCCTCAGGTGTCAAATGGACCGACATCCAATACAAGCAATGGAC
CCTCCAGCAACAACAGAAACTGTCCTTCTCCCATGCAGACAGGCGCCGCCACAGATGACAGCAAAACCAA
CCTCATCGTCAACTATTTACCCCAGAATATGACCCAAGAGGAATTCAGGAGTCTCTTTGGGAGCATTGGT
GAAATAGAATCCTGCAAACTCGTGAGAGACAAAATCACAGGACAGAGTTTAGGGTATGGATTTGTTAACT
ATATTGATCCAAAGGATGCAGAGAAAGCCATCAACACTTTAAATGGACTCAGACTCCAGACCAAAACCAT
AAAGGTGTCCTACGCCCGCCCAAGCTCGGCCTCGATCAGGGATGCTAACCTGTATGTTAGTGGCCTTCCC
AAGACCATGACCCAGAAGGAGCTGGAGCAGCTTTTCTCTCAATACGGTCGCATCATCACCTCACGCATCC
TGGTTGATCAAGTCACAGGGGTCTCTAGAGGGGTGGGATTCATCCGCTTTGATAAGAGGATTGAGGCAGA
AGAAGCCATCAAAGGACTGAATGGCCAGAAGCCCAGCGGTGCTACAGAACCGATTACTGTGAAGTTTGCC
AACAACCCCAGCCAGAAGTCCAGCCAGGCCCTGCTCTCCCAGCTGTACCAGTCCCCCAACAGGCGATACC
CTGGCCCTCTCCACCACCAGGCTCAAAGATTCAGGCTGGACAATTTGCTTAATATGGCCTATGGCGTAAA
GAGGTTCTCCCCAATCACCATTGACGGGATGACAAGTCTTGTGGGAATGAACATCCCTGGTCACACAGGG
ACAGGCTGGTGCATCTTCGTCTATAACCTGTCCCCTGATTCTGATGAGAGTGTCCTCTGGCAGCTCTTTG
GCCCCTTTGGCGCAGTGAACAACGTCAAGGTCATCCGTGACTTCAACACCAACAAGTGCAAGGGATTCGG
CTTCGTCACCATGACCAACTACGATGAGGCAGCCATGGCCATCGCCAGCCTCAATGGCTATCGCCTGGGA
GACAGAGTGTTGCAAGTTTCCTTTAAAACCAACAAAGCCCACAAATCCTGA

Translation (366 aa):
MVMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIG
EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLP
KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA
NNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTG
TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG
DRVLQVSFKTNKAHKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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