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Report for CCDS51220.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51220.1 Public Mus musculus 4 Slc24a2 23 108 98 CCDS HistoryNCBI Gene:76376Re-query CCDS DB by CCDS ID:51220.1Re-query CCDS DB by GeneID:76376See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51220.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107158.8 ENSMUSP00000102776.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107158.8Link to Ensembl Protein Viewer:ENSMUSP00000102776.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107158Re-query CCDS DB by Protein ID:ENSMUSP00000102776
Original member Current member NCBI NM_001110240.1 NP_001103710.1 Accepted alive Link to Nucleotide Sequence:NM_001110240.1Link to Protein Sequence:NP_001103710.1Re-query CCDS DB by Nucleotide ID:NM_001110240Re-query CCDS DB by Protein ID:NP_001103710Link to BLAST:NP_001103710.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103710.1 711 Q8BUN9-2 711 100% 0 0

Chromosomal Locations for CCDS 51220.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 86991344 86991593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86996513 86996679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87001310 87001399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87011629 87011772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87028246 87028364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87032193 87032291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87073188 87073296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87076119 87076157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87176162 87176347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87226883 87227815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2136 nt):
ATGGATCTCCACCAAAGCCCCACAGCCAGGCTCCTGCAGAAATGGTGTTCCCATGAGTCACCATTTGGCT
GCAGGAGACATTATAATAGCAGGAAAAAACTGAAGCTAATTCGAGTCATTGGCCTTGTCATGGGCCTGGT
AGCTGTGAGCACTGTCCCATTTTCAATCAGTGCCTTTACTGAGACAGACTCTCAGAGCAACAGAGGAGAA
GCCAGTGATATGAGTGGCCCCAGAGTAGCACAGGGTCACCGTCAAAGAACTCTCTTAGACTTAAATGACA
AGATTCGAGATTACACCCCACAGCCACCTGCTTCTCAGGAAGACCAAGCTGAGAACAGTACTGAGCACAC
CCAGGGAGACTACCCAAAGGACATCTTTTCCCTGGAGGAGCGAAGGAAAGGTGCCATCATTCTGCATGTC
ATTGGGATGATCTATATGTTCATAGCATTAGCCATCGTCTGTGATGAGTTCTTTGTTCCTTCTCTAACTG
TCATCACTGAAAAACTGGGAATCTCTGATGATGTGGCTGGAGCCACCTTCATGGCTGCAGGCGGGTCAGC
CCCAGAACTTTTCACGTCTCTTATAGGGGTCTTCATTGCTCACAGCAATGTCGGCATTGGCACCATCGTG
GGTTCCGCCGTGTTCAATATTCTCTTTGTTATTGGCATGTGTGCTCTGTTTTCTAGAGAAATCCTAAACC
TGACCTGGTGGCCGCTCTTTCGGGATGTGTCCTTCTACATCGTTGATTTGCTCATGTTGATCACATTTTT
CCTGGATAACGTTATCATGTGGTGGGAAAGCTTACTCCTCTTAACAGCTTATTTCGCCTATGTGGTTTTC
ATGAAGTTCAACGTCCAAGTAGAGAGATGGGTGAAGCAAATGATATCTCGCAATAATGTTATCAAGGTGA
CAGTGCCAGAAGCCCAAGCAAAGCTCTCAGAATTCCCTCCAGCCTCACAGGCAGATGGGAGGACAGCTTG
CCCTACAATAACAAATGACCCTGACTGCCAGAGTCTGTGTTTCGAGGTCTACCCTGAGACAGCCAGGCAT
GGGTCCTGCATAACGAATGTGAATGGAGAGCCGCTGAAAGAAAAGACCCAGAACAGCTGTATGGAAGAGT
CACCTACAGCTGGGGACAAGGATGGGCCAACTTTACCGTCGAAGCCACGCCTCCAACGAGGCGGAAGCTC
TGCCTCCCTCCACAACAGTCTCATGAGGAATAGCATCTTCCAGCTCATGATACACACCCTTGACCCACTC
GCTGAAGGGAGGTTCAGAGAAAAAGCTTCAATTCTCCACAAGATCGCCAAGAAGAAATGCCAAGTGGATG
AGAATGAGAGGCAGAATGGGGCTGCCAATCATGTGGAAAAAATTGAACTCCCCAACAGCACAAGCACAGA
GGTGGAAATGACGCCATCGAGCGAAGCTTCGGAACCCGTCCAGAATGGAAACCTCTCCCACAACATTGAA
GCTGCAGATGCCCCGAAGGCCACAGAGACTGCCGAGGAAGAAGATGACCAGCCCCTCAGCTTGTCCTGGC
CGACCAACACCCGCAAGCAAGCCACCTTCCTAATCGTTTTTCCCATTGTGTTCCCTCTCTGGATCACCTT
ACCTGACGTCCGAAAACCTGCTTCCAGGAAGTTCTTCCCTATCACATTCTTCGGCTCCATCACCTGGATT
GCAGTTTTCTCATACCTGATGGTGTGGTGGGCACACCAGGTTGGAGAGACAATCGGCATTAGTGAAGAAA
TCATGGGTCTGACCATCTTGGCTGCTGGGACCTCTATCCCTGATCTTATCACCAGTGTCATAGTGGCCCG
AAAGGGCCTGGGGGACATGGCTGTGTCCAGCTCTGTTGGAAGCAACATCTTTGACATCACTGTGGGGCTC
CCACTGCCCTGGCTCCTCTACACCATCATCCACAGATTCAGCCCAGTGACTGTCAGCAGCAATGGCCTCT
TCTGTGCCATCGTCCTTCTCTTCATCATGTTGCTTTTTGTCATTCTCTCCATCGCCCTCTGCAAATGGCG
GATGAACAAAATCCTCGGCTTCATCATGTTTGGCCTCTACTTCGTGTTCCTGGTGGTCAGCGTCCTCCTG
GAAGACAAAGTTCTCGTGTGCCCTGTCTCCATCTAG

Translation (711 aa):
MDLHQSPTARLLQKWCSHESPFGCRRHYNSRKKLKLIRVIGLVMGLVAVSTVPFSISAFTETDSQSNRGE
ASDMSGPRVAQGHRQRTLLDLNDKIRDYTPQPPASQEDQAENSTEHTQGDYPKDIFSLEERRKGAIILHV
IGMIYMFIALAIVCDEFFVPSLTVITEKLGISDDVAGATFMAAGGSAPELFTSLIGVFIAHSNVGIGTIV
GSAVFNILFVIGMCALFSREILNLTWWPLFRDVSFYIVDLLMLITFFLDNVIMWWESLLLLTAYFAYVVF
MKFNVQVERWVKQMISRNNVIKVTVPEAQAKLSEFPPASQADGRTACPTITNDPDCQSLCFEVYPETARH
GSCITNVNGEPLKEKTQNSCMEESPTAGDKDGPTLPSKPRLQRGGSSASLHNSLMRNSIFQLMIHTLDPL
AEGRFREKASILHKIAKKKCQVDENERQNGAANHVEKIELPNSTSTEVEMTPSSEASEPVQNGNLSHNIE
AADAPKATETAEEEDDQPLSLSWPTNTRKQATFLIVFPIVFPLWITLPDVRKPASRKFFPITFFGSITWI
AVFSYLMVWWAHQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGL
PLPWLLYTIIHRFSPVTVSSNGLFCAIVLLFIMLLFVILSIALCKWRMNKILGFIMFGLYFVFLVVSVLL
EDKVLVCPVSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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