NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, December 17, 2024, starting at 8:00 a.m. EST for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18231.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18231.1 Public Mus musculus 4 Mup1 23 108 98 CCDS HistoryNCBI Gene:17840Re-query CCDS DB by CCDS ID:18231.1Re-query CCDS DB by GeneID:17840See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18231.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103012.9 ENSMUSP00000100077.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103012.9Link to Ensembl Protein Viewer:ENSMUSP00000100077.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103012Re-query CCDS DB by Protein ID:ENSMUSP00000100077
Original member Current member EBI ENSMUST00000107499.3 ENSMUSP00000103123.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107499.3Link to Ensembl Protein Viewer:ENSMUSP00000103123.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000107499Re-query CCDS DB by Protein ID:ENSMUSP00000103123
Original member Current member NCBI NM_001163010.1 NP_001156482.1 Accepted alive Link to Nucleotide Sequence:NM_001163010.1Link to Protein Sequence:NP_001156482.1Re-query CCDS DB by Nucleotide ID:NM_001163010Re-query CCDS DB by Protein ID:NP_001156482Link to BLAST:NP_001156482.1
Original member Current member NCBI NM_031188.2 NP_112465.2 Accepted alive Link to Nucleotide Sequence:NM_031188.2Link to Protein Sequence:NP_112465.2Re-query CCDS DB by Nucleotide ID:NM_031188Re-query CCDS DB by Protein ID:NP_112465Link to BLAST:NP_112465.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156482.1 180 P11588 180 99.4444% 0 1
NP_112465.2 180 P11588 180 99.4444% 0 1

Chromosomal Locations for CCDS 18231.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 60499076 60499101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 60499266 60499367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 60499711 60499821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 60500439 60500512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 60501282 60501415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 60501754 60501849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGAAGATGCTGCTGCTGCTGTGTGTGGGACTGACCCTAGTCTGTGTCCATGCAGAAGAAGCTAGTTCTA
CGGGAAGGAACTTTAATGTAGAAAAGATTAATGGGGAATGGCATACTATTATCCTGGCCTCTGACAAAAG
AGAAAAGATAGAAGATAATGGCAACTTTAGACTTTTTCTGGAGCAAATCCATGTCTTGGAGAATTCCTTA
GTTCTTAAATTCCATACTGTAAGAGATGAAGAGTGCTCGGAATTATCTATGGTTGCTGACAAAACAGAAA
AGGCTGGTGAATATTCTGTGACGTATGATGGATTCAATACATTTACTATACCTAAGACAGACTATGATAA
CTTTCTTATGGCTCATCTCATTAACGAAAAGGATGGGGAAACCTTCCAGCTGATGGGGCTCTATGGCCGA
GAACCAGATTTGAGTTCAGACATCAAGGAAAGGTTTGCACAACTATGTGAGAAGCATGGAATCCTTAGAG
AAAATATCATTGACCTATCCAATGCCAATCGCTGCCTCCAGGCCCGAGAATGA

Translation (180 aa):
MKMLLLLCVGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSL
VLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGR
EPDLSSDIKERFAQLCEKHGILRENIIDLSNANRCLQARE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH