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Report for CCDS80089.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80089.1 Public Mus musculus 4 Unc13b 23 108 98 CCDS HistoryNCBI Gene:22249Re-query CCDS DB by CCDS ID:80089.1Re-query CCDS DB by GeneID:22249See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80089.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079978.12 ENSMUSP00000078894.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079978.12Link to Ensembl Protein Viewer:ENSMUSP00000078894.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000079978Re-query CCDS DB by Protein ID:ENSMUSP00000078894
Original member Current member NCBI NM_001310758.1 NP_001297687.1 Accepted alive Link to Nucleotide Sequence:NM_001310758.1Link to Protein Sequence:NP_001297687.1Re-query CCDS DB by Nucleotide ID:NM_001310758Re-query CCDS DB by Protein ID:NP_001297687Link to BLAST:NP_001297687.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297687.1 1590 Q9Z1N9-2 1590 100% 0 0

Chromosomal Locations for CCDS 80089.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 43059264 43059285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43087903 43087932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43091228 43091327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43095746 43095863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43096899 43097022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43101801 43101874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43115103 43115160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43165744 43165978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43180328 43180642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43182769 43182859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43230118 43230164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43232530 43232608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43234666 43234740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43235182 43235401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43236920 43237147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43237697 43237838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43239297 43239466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43239846 43239961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43240225 43240388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43241007 43241157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43243235 43243303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43244702 43244791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43245468 43245596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43249457 43249581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43250217 43250302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43255475 43255601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43255821 43255917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43256129 43256272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43256776 43256853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43257276 43257353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43257847 43257935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43258150 43258302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43258421 43258544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43258651 43258707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43258869 43258949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43259462 43259609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43261682 43261774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43262977 43263136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43263300 43263585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4773 nt):
ATGTCGCTGCTCTGTGTGCGTGTTAAAAGAGCCAAATTCCAGGGTTCACCAGATAAATTTAACACATATG
TGACCCTGAAAGTCCAGAACGTGAAGAGCACAACTGTAGCAGTTCGTGGTGATCAGCCTTCCTGGGAGCA
GGATTTCATGTTTGAGATCAGTCGTCTGGACCTGGGCCTAAGTGTGGAGGTGTGGAACAAGGGACTGATA
TGGGACACAATGGTGGGCACCGTGTGGATTGCACTGAAGACAATCCGTCAGTCGGATGAGGAAGGGCCCG
GGGAGTGGTCTACACTGGAGGCAGAGACGTTAATGAAAGATGATGAGATCTGTGGAACTAAAAATCCAAC
TCCTCATAAAATCTTGCTTGATACAAGATTTGAGCTGCCTTTTGACATCCCAGAGGAGGAAGCCAGATAT
TGGACCTACAAATTGGAGCAAATCAATGCCTTGGCAGATGATAATGAGTATTCTAGTCAAGAAGAAAGCC
AGAGGAAGCCATTACCCACTGCTGCCGCCCAGTGTTCCTTTGAAGACCCTGATAGTGCCGTTGATGACCG
AGACAGTGACTACCGCAGTGAGACCAGCAATAGCGCCCCACCTCCTTACCACACGACTACCCAGCCCAAC
GCTTCTGTACACCAGTTCCCTGTTCCTGTGCGGCTGCCACAGCAGCTCTTTCTTCAAGGCAGTTCCCATG
ACTCTTGCAATGACTCTATGCAGAGTTACGACCTTGATTATCCAGAGCGTCGGGCCCTCAGCCCTACCAG
CAGTAGTAGGTATGGCTCCTCCTGTAATGTGAGTCAAGGAAGCTCTCTGCTGAGTGAGCTGGACCAGTAT
CATGAGCAAGATGATGATGGTCGGGAGAGGGACTCCATTCATTCTAGTCATAGCTATGGCAGCCTCTCCA
AAGATGGCCAGGCTGGTTTGGGAGAACAAGAGAAAGCCTTGGAAGTGACATGTGAATCAGAAAAAGAGAA
AACAGGTGAATCCAAGGAGATGAGAGATGATGCTACAATCCACCCTCCTTCAGATCTGGTGCTGCATAAG
GACCATGTCCTAGGACCCCAGGAGAGTCTTCCTGAGGAGACCGCATCATCGCCATTTACCCAGGCCAGAG
CACACTGGTTCCGAGCGGTTACCAAGGTCCGACTCCAACTGCAGGAGATTTCAGATGATGGTGACCCCTC
CTTGCCTCAGTGGCTCCCAGAAGGGCCAGCTGGAGGGCTCTATGGCATTGACAGCATGCCAGATCTACGA
AGGAAGAAGCCACTGCCACTTGTCAGTGATCTGTCACTGGTCCAGTCACGGAAAGCTGGGATTACATCTG
CTATGGCTACACGTACCTCTCTCAAGGATGAAGAACTGAAATCTCATGTGTATAAGAAAACTCTGCAGGC
CTTAATCTACCCCATCTCGTGTACCACGCCCCACAACTTTGAGGTCTGGTCTGCCACTACACCTACCTAT
TGCTATGAGTGTGAAGGCTTGCTCTGGGGCCTTGCCCGGCAAGGCATGCGCTGCAGCGAGTGTGGAGTCA
AGTGCCATGAGAAGTGCCAGGACCTGCTCAATGCTGACTGCCTACAGCGGGCTGCTGAAAAGAGCTCTAA
GCATGGAGCTGAGGACCGAACTCAGAACATTATCATGGCCATGAAGGACCGTATGAAGATCCGAGAACGG
AATAAACCAGAGATCTTTGAGGTTATCCGGGATGTGTTCACAGTGAGCAAAGTTGCGCATGTGCAGCAGA
TGAAAACAGTAAAGCAGAGTGTCCTGGATGGCACCTCCAAGTGGTCAGCCAAAATTACCATCACGGTGGT
TTGTGCCCAGGGCCTACAAGCCAAAGACAAGACAGGATCCAGTGACCCTTATGTGACTGTGCAAGTTGGG
AAAACCAAGAAGCGCACCAAGACCATTTTTGGAAATTTGAATCCTGTTTGGGAAGAGAAGTTCCATTTTG
AGTGCCACAACTCTTCTGATCGAATTAAGGTACGCGTGTGGGATGAGGATGATGACATCAAGTCCAGAGT
AAAGCAGCGGCTAAAGCGAGAGTCAGATGATTTCCTTGGCCAAACTATCATTGAAGTTCGAACGCTGAGT
GGAGAGATGGATGTCTGGTACAATCTGGAGAAGAGAACAGACAAGTCAGCTGTCTCAGGGGCTATCCGAC
TTCAAATCAGTGTGGAGATCAAGGGGGAGGAGAAGGTAGCCCCATACCATGTACAATATACATGTCTCCA
TGAGAACCTTTTCCATTACCTCACAGACATTCAGGGCAGTGGAGGAGTCTGGATCCCAGAGGCTCGGGGG
GACGATGCATGGAAGGTGTACTTTGATGAGACAGCCCAAGAAATTGTGGATGAATTCGCTATGCGCTATG
GCATCGAGTCCATTTATCAGGCCATGACGCACTTTGCATGTTTGTCATCCAAGTACATGTGTCCTGGTGT
ACCAGCCGTGATGAGCACCTTACTGGCCAACATCAATGCCTATTATGCTCACACAACTGCCTCCACTAAC
GTCTCTGCATCTGATCGTTTTGCAGCCTCCAACTTTGGTAAAGAAAGATTTGTAAAACTGCTGGACCAGC
TACACAACTCACTGAGGATAGACCTCTCTACATACAGGAATAACTTTCCTGCTGGGAGCCCTGAGCGGCT
TCAGGATTTAAAGTCTACAGTGGATTTGCTGACCAGCATTACTTTCTTCAGGATGAAGGTGCAAGAACTT
CAGAGCCCTCCAAGAGCCAGCCAGGTGGTAAAGGACTGTGTGAAAGCCTGCTTGAACTCTACATATGAAT
ACATCTTCAACAACTGCCATGACCTCTACAGTCACCAGTATCAGCTGCAGGAACAACCTCTAGAGGAACC
AGGGCCCAGCATTCGGAACTTGGATTTCTGGCCCAAACTTATCACACTCATTGTTTCGATCATAGAGGAG
GATAAGAATTCCTACACACCTGTTCTGAGCCAGTTTCCTCAGGAGTTGAACGTAGGAAAAGTCAGTGCAG
AAGTGATGTGGCATCTGTTTGCTCAAGACATGAAATATGCACTGGAGGAACACGAGAAAGACCGGCTGTG
TAAGAGTGCTGACTACATGAACCTGCACTTCAAGGTGAAGTGGCTCCACAATGAATATGTGCGCGATCTG
CCTGCCCTCCAGGGGCAAGTGCCTGAGTACCCAGCGTGGTTTGAGCAGTTTGTGCTACAGTGGCTAGATG
AGAATGAAGATGTGTCACTGGAATTCCTTCGTGGGGCCTTGGAACGAGATAAGAAGGATGGGTTCCAGCA
GACATCAGAGCATGCCTTGTTTTCCTGTTCTGTGGTGGATGTCTTTACACAACTCAACCAGAGCTTTGAG
ATCATCCGGAAGTTGGAATGTCCAGACCCCAACATCCTTGCCCACTACATGAGAAGGTTTGCTAAGACCA
TTGGGAAAGTGCTGATGCAGTATGCAGACATCTTATCAAAGAACTTCCCAGCTTACTGCACAAAGGAGAG
ACTGCCCTGTATCCTGATGAACAACATGCAGCAACTGAGGGTCCAGCTGGAGAAAATGTTTGAGGCCATG
GGAGGCAAAGAGCTGGACTCCGAAGCTGCAGACAGTCTGAAGGAGCTGCAGGTGAAACTGAATACAGTTC
TGGATGAGCTTAGCATGGTGTTTGGAAACAGCTTCCAGGTGCGGATTGATGAATGTGTTCGACAAATGGC
TGACATCCTGGGCCAAGTTCGGGGCACAGGGAATGCATCCCCTAACGCCAGGGCCTCGGTGGCTCAGGAT
GCAGATAGTGTGCTGCGACCTCTCATGGACTTCCTGGATGGCAACCTCACGCTGTTTGCCACTGTGTGTG
AGAAGACAGTTCTGAAGCGGGTCCTGAAGGAGCTCTGGCGGGTGGTGATGAACACCATGGAGCGGGTTAT
TGTCCTGCCCCCACTCACTGACCAGACGGGCACCCAGCTGATCTTAACTGCTGCCAAGGAGCTGAGCCAG
CTTTCCAAACTCAAGGACCACATGGTACGGGAGGAAACACGGAATCTCACTCCAAAGCAGTGTGCTGTCC
TCGACTTGGCCTTGGACACCATCAAGCAATACTTCCATGCAGGAGGCAATGGTCTGAAGAAAACCTTCCT
GGAAAAGAGCCCAGACCTGCAGTCTCTGCGTTATGCCCTCTCTCTGTATACACAGACTACAGACACTCTC
ATCAAGACATTTGTGCGCTCACAGACTGCCCAGGGGGCTGGTGTGGATGACCCCGTGGGAGAAGTCTCTA
TTCAGGTGGACTTATTTACACATCCTGGCACTGGGGAGCATAAGGTCACAGTGAAAGTGGTAGCAGCCAA
TGACCTCAAGTGGCAGACAGCGGGTATGTTCCGGCCTTTTGTGGAAGTGACCATGGTTGGCCCACACCAA
AGTGATAAGAAGAGGAAGTTCACAACCAAGTCTAAAAGTAACAACTGGACTCCCAAGTACAACGAGACGT
TTCACTTCCTCCTGGGAAATGAAGAGGGTCCAGAGGCCTATGAATTGCAGATCTGTGTGAAGGATTACTG
CTTTGCCCGGGAGGATCGTGTGATAGGACTGGCAGTGATGCCCCTGAGGGATGTGGCAGCTAAGGGCAGC
TGTGCCTGCTGGTGCCCACTGGGCCGGAAGATCCATATGGATGAGACAGGCATGACCATTCTCCGGATTC
TGTCTCAGAGGAGCAATGACGAGGTAGCCCGAGAGTTCGTGAAGCTCAAATCAGAGTCTCGATCCACAGA
GGAAGGGAGCTGA

Translation (1590 aa):
MSLLCVRVKRAKFQGSPDKFNTYVTLKVQNVKSTTVAVRGDQPSWEQDFMFEISRLDLGLSVEVWNKGLI
WDTMVGTVWIALKTIRQSDEEGPGEWSTLEAETLMKDDEICGTKNPTPHKILLDTRFELPFDIPEEEARY
WTYKLEQINALADDNEYSSQEESQRKPLPTAAAQCSFEDPDSAVDDRDSDYRSETSNSAPPPYHTTTQPN
ASVHQFPVPVRLPQQLFLQGSSHDSCNDSMQSYDLDYPERRALSPTSSSRYGSSCNVSQGSSLLSELDQY
HEQDDDGRERDSIHSSHSYGSLSKDGQAGLGEQEKALEVTCESEKEKTGESKEMRDDATIHPPSDLVLHK
DHVLGPQESLPEETASSPFTQARAHWFRAVTKVRLQLQEISDDGDPSLPQWLPEGPAGGLYGIDSMPDLR
RKKPLPLVSDLSLVQSRKAGITSAMATRTSLKDEELKSHVYKKTLQALIYPISCTTPHNFEVWSATTPTY
CYECEGLLWGLARQGMRCSECGVKCHEKCQDLLNADCLQRAAEKSSKHGAEDRTQNIIMAMKDRMKIRER
NKPEIFEVIRDVFTVSKVAHVQQMKTVKQSVLDGTSKWSAKITITVVCAQGLQAKDKTGSSDPYVTVQVG
KTKKRTKTIFGNLNPVWEEKFHFECHNSSDRIKVRVWDEDDDIKSRVKQRLKRESDDFLGQTIIEVRTLS
GEMDVWYNLEKRTDKSAVSGAIRLQISVEIKGEEKVAPYHVQYTCLHENLFHYLTDIQGSGGVWIPEARG
DDAWKVYFDETAQEIVDEFAMRYGIESIYQAMTHFACLSSKYMCPGVPAVMSTLLANINAYYAHTTASTN
VSASDRFAASNFGKERFVKLLDQLHNSLRIDLSTYRNNFPAGSPERLQDLKSTVDLLTSITFFRMKVQEL
QSPPRASQVVKDCVKACLNSTYEYIFNNCHDLYSHQYQLQEQPLEEPGPSIRNLDFWPKLITLIVSIIEE
DKNSYTPVLSQFPQELNVGKVSAEVMWHLFAQDMKYALEEHEKDRLCKSADYMNLHFKVKWLHNEYVRDL
PALQGQVPEYPAWFEQFVLQWLDENEDVSLEFLRGALERDKKDGFQQTSEHALFSCSVVDVFTQLNQSFE
IIRKLECPDPNILAHYMRRFAKTIGKVLMQYADILSKNFPAYCTKERLPCILMNNMQQLRVQLEKMFEAM
GGKELDSEAADSLKELQVKLNTVLDELSMVFGNSFQVRIDECVRQMADILGQVRGTGNASPNARASVAQD
ADSVLRPLMDFLDGNLTLFATVCEKTVLKRVLKELWRVVMNTMERVIVLPPLTDQTGTQLILTAAKELSQ
LSKLKDHMVREETRNLTPKQCAVLDLALDTIKQYFHAGGNGLKKTFLEKSPDLQSLRYALSLYTQTTDTL
IKTFVRSQTAQGAGVDDPVGEVSIQVDLFTHPGTGEHKVTVKVVAANDLKWQTAGMFRPFVEVTMVGPHQ
SDKKRKFTTKSKSNNWTPKYNETFHFLLGNEEGPEAYELQICVKDYCFAREDRVIGLAVMPLRDVAAKGS
CACWCPLGRKIHMDETGMTILRILSQRSNDEVAREFVKLKSESRSTEEGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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