CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS51016.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
51016.1 |
Public |
Mus musculus |
3 |
Hsd3b3 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:15494](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:51016.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:15494](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 3 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 51016.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000090743.12 |
ENSMUSP00000088246.6 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000090743.12](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000088246.6](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000090743](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000088246](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000107019.7 |
ENSMUSP00000102633.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000107019.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000102633.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000107019](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000102633](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001161742.1 |
NP_001155214.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001161742.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001155214.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001161742](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001155214](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001155214.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001161743.1 |
NP_001155215.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001161743.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001155215.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001161743](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001155215](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001155215.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001161744.1 |
NP_001155216.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001161744.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001155216.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001161744](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001155216](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001155216.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001161745.1 |
NP_001155217.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001161745.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001155217.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001161745](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001155217](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001155217.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 51016.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1122 nt): ATGCCTGGGTGGAGCTGCCTGGTGACTGGAGCAGGAGGGTTTTTGGGCCAGAGGATCATCCAGTTGTTGG TGCAGGAGAAAGATCTTGAGGAGATCAGGGTCCTGGACAAGGTCTTCAAACCTGAAACCAGGGAGCAATT CTTCAACCTAGGGACAAGCATCAAGGTGACAGTGTTGGAAGGAGACATTCTTGACACCCAGTACCTGAGG AGAGCTTGCCAGGGCATCTCTGTTGTCATCCATACTGCTGCCATCATTGATGTCACAGGTGTCATTCCCA GGCAGACCATCCTAGATGTCAATCTGAAAGGTACCCAGAACTTATTGGAGGCCTGTATCCAAGCCAGTGT GCCAGCCTTCATCTTCTCCAGCTCAGTTGACGTTGCAGGGCCCAACTCTTACAAGGACATTGTCCTGAAT GGCCACGAGGACGAGCATCGTGAAAGCACATGGTCTGACCCATACCCATACAGCAAAAAGATGGCTGAGA AGGCAGTGCTGGCAGCCAATGGGAGCATGCTGAAAAATGGTGGCACTTTGCAAACTTGTGCATTAAGGCC CATGTGCATTTATGGGGAGAGAAGTCAATTCCTTTCTAACACAATAATTAAGGCCCTCAAAAATAAGTTT ATTCTGAGAGGTGGGGGCAAATTCTCCACAGCCAACCCAGTATATGTGGGCAATGTGGCCTGGGCACACA TTCTGGCTGCCAGGGGCCTTCGAAACCCCAAGAAGTCACCAAATATCCAAGGAGAGTTCTACTACATCTC AGATGATACCCCTCACCAAAGTTATGATGATTTAAATTACACCCTGAGCAAGGAGTGGGGCTTCTGCCTC AATTCCAGGTGGTACCTTCCTGTGCCCATACTGTACTGGCTTGCCTTCCTGCTGGAAACTGTGAGCTTCC TGCTGAGTCCAATCTACAGATATATACCTCCCTTTAACCGCCACTTGGTCACACTGACAGCTAGTACGTT CACTTTCTCCTACAAGAAAGCTCAGCGAGATCTGGGCTATGAGCCACTTGTCAGCTGGGAGGAAGCCAAG CAGAAAACCTCAGAGTGGATCGGGACACTAGTGGAGCAGCACAGGGAGACACTGGACACAAAGTCTCAGT GA
Translation (373 aa): MPGWSCLVTGAGGFLGQRIIQLLVQEKDLEEIRVLDKVFKPETREQFFNLGTSIKVTVLEGDILDTQYLR RACQGISVVIHTAAIIDVTGVIPRQTILDVNLKGTQNLLEACIQASVPAFIFSSSVDVAGPNSYKDIVLN GHEDEHRESTWSDPYPYSKKMAEKAVLAANGSMLKNGGTLQTCALRPMCIYGERSQFLSNTIIKALKNKF ILRGGGKFSTANPVYVGNVAWAHILAARGLRNPKKSPNIQGEFYYISDDTPHQSYDDLNYTLSKEWGFCL NSRWYLPVPILYWLAFLLETVSFLLSPIYRYIPPFNRHLVTLTASTFTFSYKKAQRDLGYEPLVSWEEAK QKTSEWIGTLVEQHRETLDTKSQ
|