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Report for CCDS17307.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17307.1 Public Mus musculus 3 Mccc1 23 108 98 CCDS HistoryNCBI Gene:72039Re-query CCDS DB by CCDS ID:17307.1Re-query CCDS DB by GeneID:72039See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17307.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029259.9 ENSMUSP00000029259.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029259.9Link to Ensembl Protein Viewer:ENSMUSP00000029259.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000029259Re-query CCDS DB by Protein ID:ENSMUSP00000029259
Original member NCBI NM_023644.4 NP_076133.3 Updated not alive Link to Nucleotide Sequence:NM_023644.4Link to Protein Sequence:NP_076133.3Re-query CCDS DB by Nucleotide ID:NM_023644Re-query CCDS DB by Protein ID:NP_076133
Current member NCBI NM_023644.5 NP_076133.3 Accepted alive Link to Nucleotide Sequence:NM_023644.5Link to Protein Sequence:NP_076133.3Re-query CCDS DB by Nucleotide ID:NM_023644Re-query CCDS DB by Protein ID:NP_076133Link to BLAST:NP_076133.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076133.3 717 Q99MR8 717 100% 0 0

Chromosomal Locations for CCDS 17307.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 35960013 35960129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35960933 35961004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35963585 35963692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35964327 35964464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35968424 35968473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35972478 35972564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35974074 35974290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35975795 35975904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35976661 35976844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35978923 35979050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35983733 35983814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35984982 35985093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35989844 35989965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35990049 35990196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35990697 35990818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35993916 35994011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35995781 35995917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35997525 35997571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36000481 36000557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2154 nt):
ATGGCGGCGGCGGCGTTGTTGGCTGCGGTGGACAGGAACCAGTTGCGACGGGTCCCGATCCTGCTGCTGC
AGCCGAGGGAATGGGCTTGGAAGTTGAGAACCATGAAGTATGGAACAACCCCAGGAGGAAGTATTACCAA
GGTCCTCATTGCAAACAGAGGAGAAATTGCCTGCAGGGTGATACGAACAGCCAAAAAGATGGGTGTGCAG
TCGGTGGCTGTGTACAGTGAGGCCGACCGGAATTCCATGCATGTAGATATGGCAGACGAGGCATATTCCA
TTGGCCCTGCTCCATCTCAGCAGAGCTACCTCGCAATGGAGAAAATCATTCAAGTGGCCAAGAGCTCTGC
AGCACAGGCCATCCATCCAGGCTACGGTTTTCTTTCGGAAAACATGGAGTTTGCTGAACTTTGTAAGCAA
GAGGGAATCATTTTTATAGGTCCTCCTTCGTCTGCAATTAGAGACATGGGTATAAAGAGCACGTCCAAGT
CCATCATGGCTGCTGCTGGAGTTCCTGTTGTGGAAGGTTACCATGGCAAGGACCAGTCTGATCAGTGCCT
GAGAGAGCATGCTGGGAAAATCGGGTATCCTGTTATGATCAAAGCAGTCCGTGGTGGAGGAGGAAAAGGC
ATGAGGATCGTTAGATCAGAGAGAGAATTCCAAGAGCAGTTAGAGTCAGCCCGGAGGGAGGCGAAGAAGT
CTTTCAATGATGATGCAATGTTGATCGAGAAGTTCGTGGACACTCCAAGGCATGTAGAAGTCCAGGTGTT
TGGTGATCACCATGGCAACGCAGTGTACTTGTTTGAAAGAGACTGTAGTGTGCAGAGGCGACATCAGAAG
ATCATTGAGGAGGCCCCAGCGCCTGGTATTAATCCTGAAGTAAGAAGAAAGCTGGGAGAGGCTGCAGTCA
GAGCTGCGAAGGCTGTCAAGTACGTGGGAGCAGGAACTGTGGAATTCATTATGGACTCAAGGCACAATTT
TTATTTCATGGAGATGAACACCAGGCTACAAGTGGAACATCCTGTCACTGAAATGATCACAGGGACTGAC
TTGGTGGAGTGGCAACTCAGGATTGCAGCAGGAGAGAAGATTCCTTTGAGCCAGGAAGAAATCCCTCTGC
AGGGCCATGCCTTTGAGGCTAGAATCTATGCAGAAGACCCTGACAATAACTTCATGCCAGGGGCTGGACC
GTTGGTTCATCTCTCTACCCCTTCGGCAGACATGTCTACGAGGATTGAAACTGGAGTCCGGCAAGGAGAT
GAAGTCTCGGTGCATTACGATCCCATGATCGCAAAGCTCGTTGTGTGGGCCTCAGACCGCCAGTCAGCCC
TGTCGAAGCTGAGGTACTGCCTTCATCAGTACAACATTGTCGGCTTGCGCAGCAACGTGGACTTCCTGCT
CCGGCTCTCCGGCCACCCAGAGTTTGAGGCTGGGAACGTGCACACGGACTTCATCCCTCAGCACCACAAG
GACCTGCTGCCGAGTCACAGCACTATAGCCAAAGAGTCTGTGTGCCAGGCAGCTCTGGGGCTCATCCTCA
AAGAGAAAGAAATGACCAGCGCTTTTAAACTCCACACTCAAGATCAATTCTCTCCGTTTTCATTCAGCAG
TGGGAGAAGACTGAATATCTCTTACACCAGGAACATGACTCTGAGAAGTGGTAAAAGTGATATAGTCATA
GCTGTGACGTATAACCGCGATGGGTCATATGATATGCAGATTGACAACAAGTCCTTCCGAGTCCTGGGCG
ATCTTTCCAGTGAAGATGGCTGTACCTACCTGAAGTCTTCTATTAATGGGGTAGCCCGTAAATCCAAGTT
CATCCTCCTGGACAACACTGTCCACCTGTTTTCTATGGAAGGCAGTATTGAAGTTGGCATTCCAGTGCCC
AAGTACTTGTCTCCAGTGAGTGCAGAAGGAGCTCAGGGGGGCACCATCGCGCCCATGACTGGAACCATTG
AAAAGGTGTTTGTGAAAGCTGGAGACAGAGTAAAAGCTGGAGACTCTCTGATGGTTATGATTGCCATGAA
GATGGAGCATACCATAAAGGCTCCAAAGGATGGCAGGATAAAGAAGGTATTCTTCAGTGAAGGAGCCCAA
GCCAACAGACATGCACCTTTAGTGGAATTTGAGGAGGAGGAGTCTGACAAATGA

Translation (717 aa):
MAAAALLAAVDRNQLRRVPILLLQPREWAWKLRTMKYGTTPGGSITKVLIANRGEIACRVIRTAKKMGVQ
SVAVYSEADRNSMHVDMADEAYSIGPAPSQQSYLAMEKIIQVAKSSAAQAIHPGYGFLSENMEFAELCKQ
EGIIFIGPPSSAIRDMGIKSTSKSIMAAAGVPVVEGYHGKDQSDQCLREHAGKIGYPVMIKAVRGGGGKG
MRIVRSEREFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYLFERDCSVQRRHQK
IIEEAPAPGINPEVRRKLGEAAVRAAKAVKYVGAGTVEFIMDSRHNFYFMEMNTRLQVEHPVTEMITGTD
LVEWQLRIAAGEKIPLSQEEIPLQGHAFEARIYAEDPDNNFMPGAGPLVHLSTPSADMSTRIETGVRQGD
EVSVHYDPMIAKLVVWASDRQSALSKLRYCLHQYNIVGLRSNVDFLLRLSGHPEFEAGNVHTDFIPQHHK
DLLPSHSTIAKESVCQAALGLILKEKEMTSAFKLHTQDQFSPFSFSSGRRLNISYTRNMTLRSGKSDIVI
AVTYNRDGSYDMQIDNKSFRVLGDLSSEDGCTYLKSSINGVARKSKFILLDNTVHLFSMEGSIEVGIPVP
KYLSPVSAEGAQGGTIAPMTGTIEKVFVKAGDRVKAGDSLMVMIAMKMEHTIKAPKDGRIKKVFFSEGAQ
ANRHAPLVEFEEEESDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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