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Report for CCDS16932.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16932.1 Public Mus musculus 2 Cbfa2t2 23 108 98 CCDS HistoryNCBI Gene:12396Re-query CCDS DB by CCDS ID:16932.1Re-query CCDS DB by GeneID:12396See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16932.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045270.14 ENSMUSP00000043087.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045270.14Link to Ensembl Protein Viewer:ENSMUSP00000043087.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000045270Re-query CCDS DB by Protein ID:ENSMUSP00000043087
Original member Current member NCBI NM_172860.2 NP_766448.1 Accepted alive Link to Nucleotide Sequence:NM_172860.2Link to Protein Sequence:NP_766448.1Re-query CCDS DB by Nucleotide ID:NM_172860Re-query CCDS DB by Protein ID:NP_766448Link to BLAST:NP_766448.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766448.1 594 O70374-1 594 100% 0 0

Chromosomal Locations for CCDS 16932.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 154436603 154436636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154500400 154500543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154504553 154504794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154510508 154510597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154515817 154515998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154517709 154517962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154521151 154521236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154523904 154524099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154528837 154528905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154531222 154531412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154534884 154535180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1785 nt):
ATGGTGGGCGTCCCTGGAGCGGCCGCCTTCCAACTTGGTTGTGAGAAAAGGGTGCCAGCAATGCCTGGAT
CGCCTGTGGAAGTGAAGATACAGTCAAGATCCTCACCTCCCATCATGCCACCCCTCCCACCAATAAATCC
TGGAGGACCGAGGCCAGTGTCCTTTACTCCTACAGCATTAAGCAATGGCATCAACCATTCCCCTCCTACC
CTGAATGGTGCCCCATCGCCACCACAGAGATTCAGCAATGGGCCTGCCTCCTCCACATCGTCAGCACTAA
CGAATCAACAGCTGCCGGCTACTTGTGGTGCTCGGCAGCTCAGCAAGTTGAAACGCTTCCTCACCACTCT
GCAGCAGTTTGGCAATGATATCTCACCTGAGATCGGCGAGAAGGTTCGGACTCTCGTTCTAGCCTTGGTG
AACTCAACAGTAACAATTGAAGAATTCCATTGCAAGCTCCAGGAGGCCACAAACTTTCCTCTTCGTCCAT
TTGTGATTCCATTTCTCAAGGCCAACCTGCCCCTGCTGCAGCGAGAACTGCTGCACTGTGCCCGGGCTGC
CAAGCAGACCCCGTCCCAGTACCTGGCCCAGCATGAGCACCTTCTGCTCAACACCAGTATCGCATCTCCT
GCTGACTCTTCTGAACTGCTCATGGAGGTTCATGGAAATGGAAAGAGGCCCAGTCCGGAAAGGAGGGACG
AGAATAATTTTGAAAGAGATACAGTTCCTCCTGAACCGCCTGCCAAGAGAGTGTGTACTATCAGCCCTGC
TCCTCGGCACAGTCCCGCCCTCACTGTTCCCCTTATGAATCCTGGGGGCCAGTTCCATCCTACTCCACCA
CCTCTTCAGCACTATACACTAGAAGACATTGCAACTTCTCACCTGTATCGGGAACCAAACAAGATGCTAG
AACACCGAGAAGTTCGTGAGAGGCACCACAATCTTAGTCTCAATGGAGGCTATCAAGATGAGTTGGTAGA
CCACCGTTTGACAGAAAGGGAGTGGGCTGATGAATGGAAACACCTTGACCATGCACTGAATTGCATTATG
GAAATGGTAGAGAAAACTAGGCGCTCCATGGCAGTTCTGAGGCGCTGTCAGGAATCTGACCGTGAAGAAC
TCAACTATTGGAAACGGCGGTTTAATGAAAATACAGAGTTGAGGAAAACTGGGACTGAGTTGGTCTCTAG
GCAGCACAGCCCTGGGAGTACAGATTCTCTCAGCAACGATTCTCAGCGGGAATTTACCAGTAGACCAGCA
ACAGGATATGTGCCTGTGGAGTTTTGGAAGAAAACAGAAGAAGCCGTGAATAAGGTGAAAATTCAGGCCA
TGTCAGAGGTACAGAAGGCTGTAGCTGAGGCAGAGCAAAAAGCCTTTGAAGTGATTGCAACGGAGAGAGC
TCGAATGGAGCAGACCATAGCGGATGTCAAACGGCAGGCTGCAGAAGATGCTTTCCTGGTCATCAATGAG
CAAGAAGAGTCCACAGAGAACTGCTGGAACTGTGGCCGAAAAGCCAGTGAGACGTGCAGTGGCTGCAACA
TTGCTCGCTACTGCGGCTCCTTCTGCCAGCATAAGGACTGGGAGCGGCACCACCGCCTCTGTGGCCAGAG
TCTACATGGCCACAGTCCCCACAGCCAGAGCAGGCCACTGCTCCCTGGAGGGCGGGGCTCAGCCAGGTCT
GCTGACTGCAGTGTGCCCAGCCCAGCCCTGGACAAGACCTCAGCTACCACCTCACGGTCCTCAACACCTG
CCTCTGTGACAGCCATTGATGCCAACGGGCTCTAA

Translation (594 aa):
MVGVPGAAAFQLGCEKRVPAMPGSPVEVKIQSRSSPPIMPPLPPINPGGPRPVSFTPTALSNGINHSPPT
LNGAPSPPQRFSNGPASSTSSALTNQQLPATCGARQLSKLKRFLTTLQQFGNDISPEIGEKVRTLVLALV
NSTVTIEEFHCKLQEATNFPLRPFVIPFLKANLPLLQRELLHCARAAKQTPSQYLAQHEHLLLNTSIASP
ADSSELLMEVHGNGKRPSPERRDENNFERDTVPPEPPAKRVCTISPAPRHSPALTVPLMNPGGQFHPTPP
PLQHYTLEDIATSHLYREPNKMLEHREVRERHHNLSLNGGYQDELVDHRLTEREWADEWKHLDHALNCIM
EMVEKTRRSMAVLRRCQESDREELNYWKRRFNENTELRKTGTELVSRQHSPGSTDSLSNDSQREFTSRPA
TGYVPVEFWKKTEEAVNKVKIQAMSEVQKAVAEAEQKAFEVIATERARMEQTIADVKRQAAEDAFLVINE
QEESTENCWNCGRKASETCSGCNIARYCGSFCQHKDWERHHRLCGQSLHGHSPHSQSRPLLPGGRGSARS
ADCSVPSPALDKTSATTSRSSTPASVTAIDANGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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